MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-177K02
Chromosome	11 (Build37)
Map Location	67,420,195 - 67,420,363
singlet/doublet	singlet
Overlap gene	Gas7
Upstream gene	A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
Downstream gene	Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Link	Open Mouse BAC browser

Click to get alignment info.

name	A530088H08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:193003 MGI:2443635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130409J20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71576 MGI:1918826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	A730055C05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338369 MGI:2443691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310004I24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66358 MGI:1913608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sco1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52892 MGI:106362
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myh3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17883 MGI:1339709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 38 ESTs, 52 Proteins

name	Myh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17882 MGI:1339710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17879 MGI:1339711
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myh4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17884 MGI:1339713
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myh8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17885 MGI:1339712
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myh13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:544791 MGI:1339967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gas7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14457 MGI:1202388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rcvrn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19674 MGI:97883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glp2r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93896 MGI:2136733
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC544792 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:544792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins

name	Dhrs7c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68460 MGI:1915710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041899 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041899
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Usp43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216835 MGI:2444541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71860 MGI:1919110
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stx8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55943 MGI:1890156
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ntn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18208 MGI:105088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pik3r5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320207 MGI:2443588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BB220380 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104709 MGI:2144613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	BC024997 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215723 MGI:2384904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc42 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:276920 MGI:3045254
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A530088H08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369672 GeneID:193003 MGI:2443635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A530088H08 gene transcript_id : NM_178656.3

name	9130409J20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390165 GeneID:71576 MGI:1918826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA 9130409J20 gene transcript_id : XM_001000946.1

name	A730055C05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803080 GeneID:338369 MGI:2443691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A730055C05 gene transcript_id : NM_177392.2

name	2310004I24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351814 GeneID:66358 MGI:1913608
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310004I24 gene transcript_id : NM_025510.2

name	Sco1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90991709 GeneID:52892 MGI:106362
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SCO cytochrome oxidase deficient homolog 1 (yeast) transcript_id : NM_001040026.1

name	Myh3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261972 GeneID:17883 MGI:1339709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 38 ESTs, 52 Proteins product : myosin, heavy polypeptide 3, skeletal muscle, embryonic transcript_id : XM_354614.6

name	Myh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88196775 GeneID:17882 MGI:1339710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, heavy polypeptide 2, skeletal muscle, adult transcript_id : NM_001039545.1

name	Myh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82524273 GeneID:17879 MGI:1339711
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, heavy polypeptide 1, skeletal muscle, adult transcript_id : NM_030679.1

name	Myh4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67189166 GeneID:17884 MGI:1339713
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, heavy polypeptide 4, skeletal muscle transcript_id : NM_010855.2

name	Myh8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71143151 GeneID:17885 MGI:1339712
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, heavy polypeptide 8, skeletal muscle, perinatal transcript_id : NM_177369.3

name	Myh13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486958 GeneID:544791 MGI:1339967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, heavy polypeptide 13, skeletal muscle transcript_id : NM_001081250.1

name	Gas7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142389036 GeneID:14457 MGI:1202388
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth arrest specific 7 transcript_id : NM_008088.2

name	Rcvrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677692 GeneID:19674 MGI:97883
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : recoverin transcript_id : NM_009038.1

name	Glp2r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30023839 GeneID:93896 MGI:2136733
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucagon-like peptide 2 receptor transcript_id : NM_175681.2

name	LOC544792 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261928 GeneID:544792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to hCG1653800 transcript_id : XM_618894.4

name	Dhrs7c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67625740 GeneID:68460 MGI:1915710
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dehydrogenase/reductase (SDR family) member 7C transcript_id : NM_001013013.1

name	Usp43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123314451 GeneID:216835 MGI:2444541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 43 transcript_id : NM_173754.4

name	Wdr16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053951 GeneID:71860 MGI:1919110
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 16 transcript_id : NM_027963.2

name	Stx8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56118241 GeneID:55943 MGI:1890156
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntaxin 8 transcript_id : NM_018768.2

name	Ntn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112363093 GeneID:18208 MGI:105088
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : netrin 1 transcript_id : NM_008744.2

name	Pik3r5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86262160 GeneID:320207 MGI:2443588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoinositide-3-kinase, regulatory subunit 5, p101 transcript_id : NM_177320.2

name	BB220380 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126362958 GeneID:104709 MGI:2144613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence BB220380 transcript_id : NM_001081566.1

name	BB220380 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126362962 GeneID:104709 MGI:2144613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence BB220380 transcript_id : NM_001004435.2

name	BC024997 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122466 GeneID:215723 MGI:2384904
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC024997 transcript_id : NM_146004.1

name	Ccdc42 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343047 GeneID:276920 MGI:3045254
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 42 transcript_id : NM_177779.2

name	A530088H08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520017 CCDS:CCDS24849.1 GeneID:193003 MGI:2443635
definition	codon_start : 1 product : hypothetical protein LOC193003 protein_id : NP_848771.1

name	9130409J20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390166 GeneID:71576 MGI:1918826
definition	codon_start : 1 product : hypothetical protein LOC71576 protein_id : XP_001000946.1

name	A730055C05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893573 CCDS:CCDS24850.1 GeneID:338369 MGI:2443691
definition	codon_start : 1 product : hypothetical protein LOC338369 protein_id : NP_796366.1

name	2310004I24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384932 GeneID:66358 MGI:1913608
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC66358 protein_id : NP_079786.1

name	Sco1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:90991710 GeneID:52892 MGI:106362
definition	GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : SCO cytochrome oxidase deficient homolog 1 protein_id : NP_001035115.1

name	Myh3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82934745 GeneID:17883 MGI:1339709
definition	codon_start : 1 product : muscle embryonic myosin heavy chain 3 protein_id : XP_354614.4

name	Myh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88196776 CCDS:CCDS24854.1 GeneID:17882 MGI:1339710
definition	GO_component : GO:0005826 - contractile ring [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IMP] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0001778 - plasma membrane repair [Evidence IMP] codon_start : 1 note : myosin heavy chain 2A; skeletal muscle myosin heavy chain II-a product : myosin, heavy polypeptide 2, skeletal muscle, adult protein_id : NP_001034634.1

name	Myh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82524274 CCDS:CCDS24855.1 GeneID:17879 MGI:1339711
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003774 - motor activity [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : myosin heavy chain 2X product : myosin, heavy polypeptide 1, skeletal muscle, adult protein_id : NP_109604.1

name	Myh4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67189167 CCDS:CCDS24856.1 GeneID:17884 MGI:1339713
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 product : myosin, heavy polypeptide 4, skeletal muscle protein_id : NP_034985.2

name	Myh8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71143152 CCDS:CCDS24857.1 GeneID:17885 MGI:1339712
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016459 - myosin [Evidence IEA]; GO:0005863 - striated muscle thick filament [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0006941 - striated muscle contraction [Evidence IEA] codon_start : 1 product : myosin, heavy polypeptide 8, skeletal muscle, perinatal protein_id : NP_796343.2

name	Myh13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486959 GeneID:544791 MGI:1339967
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : EO Myosin; extraocular myosin product : myosin, heavy polypeptide 13, skeletal muscle protein_id : NP_001074719.1

name	Gas7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679945 GeneID:14457 MGI:1202388
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0001726 - ruffle [Evidence IDA] GO_function : GO:0051015 - actin filament binding [Evidence IDA] GO_process : GO:0051017 - actin filament bundle formation [Evidence IDA]; GO:0030041 - actin filament polymerization [Evidence IDA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IDA] codon_start : 1 exception : unclassified translation discrepancy product : growth arrest specific 7 protein_id : NP_032114.1

name	Rcvrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677693 CCDS:CCDS24859.1 GeneID:19674 MGI:97883
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IMP] GO_process : GO:0007602 - phototransduction [Evidence IMP]; GO:0051924 - regulation of calcium ion transport [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IMP] codon_start : 1 note : guanylate cyclase activator; cancer associated retinopathy protein product : recoverin protein_id : NP_033064.1

name	Glp2r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30023840 CCDS:CCDS24860.1 GeneID:93896 MGI:2136733
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : G protein-coupled receptor GLP2R product : glucagon-like peptide 2 receptor protein_id : NP_783612.2

name	LOC544792 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261929 GeneID:544792
definition	codon_start : 1 product : similar to hCG1653800 protein_id : XP_618894.4

name	Dhrs7c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67625741 GeneID:68460 MGI:1915710
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : dehydrogenase/reductase (SDR family) member 7C protein_id : NP_001013031.1

name	Usp43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123314452 CCDS:CCDS24861.1 GeneID:216835 MGI:2444541
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 43 protein_id : NP_776115.2

name	Wdr16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053952 CCDS:CCDS24862.1 GeneID:71860 MGI:1919110
definition	codon_start : 1 note : WD40-repear protein upregulated in HCC product : WD40-repeat protein upregulated in HCC protein_id : NP_082239.2

name	Stx8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055356 CCDS:CCDS24863.1 GeneID:55943 MGI:1890156
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA] codon_start : 1 note : syntaxin-like protein 3I35 product : syntaxin 8 protein_id : NP_061238.1

name	Ntn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112363094 CCDS:CCDS24864.1 GeneID:18208 MGI:105088
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007411 - axon guidance [Evidence IMP] [Evidence IDA]; GO:0007409 - axonogenesis [Evidence IDA]; GO:0040023 - establishment of nucleus localization [Evidence IDA]; GO:0030517 - negative regulation of axon extension [Evidence IDA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045773 - positive regulation of axon extension [Evidence IDA]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0030334 - regulation of cell migration [Evidence IMP] [Evidence IDA] codon_start : 1 product : netrin 1 protein_id : NP_032770.2

name	Pik3r5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86262161 CCDS:CCDS24865.1 GeneID:320207 MGI:2443588
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : phosphoinositide-3-kinase, regulatory subunit 5, p101 protein_id : NP_796294.2

name	BB220380 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126362959 GeneID:104709 MGI:2144613
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; p87 phosphoinositide 3-kinase gamma (PI3Kg) adapter protein; phosphoinositide 3-kinase regulatory subunit 6 product : p87 phosphoinositide 3-kinase gamma adapter protein isoform 1 protein_id : NP_001075035.1

name	BB220380 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52138727 CCDS:CCDS24866.1 GeneID:104709 MGI:2144613
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; p87 phosphoinositide 3-kinase gamma (PI3Kg) adapter protein; phosphoinositide 3-kinase regulatory subunit 6 product : p87 phosphoinositide 3-kinase gamma adapter protein isoform 2 protein_id : NP_001004435.1

name	BC024997 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122467 CCDS:CCDS24867.1 GeneID:215723 MGI:2384904
definition	codon_start : 1 product : hypothetical protein LOC215723 protein_id : NP_666116.1

name	Ccdc42 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244294 CCDS:CCDS24868.1 GeneID:276920 MGI:3045254
definition	codon_start : 1 product : coiled-coil domain containing 42 protein_id : NP_808447.1

name	LOC100041899 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041899
definition	number : 1 pseudo : _no_value

name	LOC100041899 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041899
definition	number : 2 pseudo : _no_value

name	LOC100041899 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041899
definition	number : 3 pseudo : _no_value

clone name	MSMg01-463P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323I11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-323H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161N06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-177K02.T7 (MSMg01no177_k02.b1)	MSMg01-177K02.TJ (MSMg01no177_k02.g1)
ACC	AG371962	AG371963
length	757	920
length of high quality (start - end)	176 (46 - 221)	---
definition	CHROMAT_FILE: MSMg01no177_k02.b1 PHD_FILE: MSMg01no177_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:14 2005	CHROMAT_FILE: MSMg01no177_k02.g1 PHD_FILE: MSMg01no177_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:14 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCACTGTTTATCTGCTCAACTCAACATATACTTATTGAGCCTTAACC ATGTACCGTGCTGAATGGCCTGGCCCCTAAACTGCTTATTTGCTCTTAGT GGGAACAGGTCTTAAAGCTTTGTGTCCATGCTTTGAGGGAACTGGAGTGT GTGTGTGTGTGTGTATGTGTNNNNNNNNNNTNNNNNTNTTNNTTTTATTT TACTTTTAAAAATAATTTATTTAATATTTTTATTTATTTATAAAATAAAT TTATTATTTTTTTTTTTTTTTTTTTTTTTTATATNTTTATTATCTATTTT ATTATTTACCACCCCCCCCCTATAACCTTTTATCCCTTTTCTCATTTTCT ATTTATTTTCCCCCTTTCACATCTAAATTAATTCCCTATATTCACTTTCA TTCCCCATCTTACCCTTACTCTTTATATTTTCTTTTTCCCCCATATCCTA CCTACCATATCTCCCTACATATATCCTCCCCTTACCCCATCTTTACTCAC AATTTCTATTTTTTCTTGCTTTTATTCCTTCTCTATCATTTCTCCTCCAT CCCACCGCCCCAATCGTTTCCTCTTACCCCCACTCTTCTCCCTTCTACTT CGCCACTTTCCCTCCTATAATCTAACCAGCCCGCTGCTTTAATCAGTTTT TTCTTTTTCTTCCAGCACATCCATACATAAACTCAACTCTTATTCTATAC TCCCCCC	TAATGATATGCNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXCGCTTCTGTAAGTACACCTGTTGTTCGA GGTGCGGGGGAAGTTTTTTCCTCCCCCTATATTTATTNCGGGCGGTATGT CTCCTCCAAACACCCCGACTTACTCATAGAGCGGTTGGTGGAGTAATGGC AAGTGTATTGCGAAATGAGGGTATGAGGTGTTAAGACCTCCTCTCAATAA CGTAGTTACGCCTGTATTTTAGCTCTCGCTCCACCTATATCCCGTGTTGG GNATGAGACAATCTAGCATATTTAACACGTATAGCGGCTGAGGTGGTTTA ATATTGTATATTTTGTTTTTGTGTGGATTTCAAATTGCTCCCCCCACACG ACGGGTCCTTTGGTGTTGTGTCCCCGCCCCGCCCCGCTCCATGCGGGTTC GGGTTGGGGGTCGTGTATTTTAGGGAGCCGGGTGTGCCCCCCCCCCTATA AGAGTAATATAATAATGGGATGGATGGAGTTATGTCCAATAAATCTATAC ATCATTTTCGTTTATTTGGGGCTGAGTATATTTTTCTGTGTAAAACACGC AACCTATATTTCGTCGGCCGTCTAAGTCTGTGTGTATGCGGTTCTATTTC CTCGCCCTGAGACTAAATTACCATGAGAGAGAAACATAATTAAGCCCGCT CGCCAGGCGTTGCGCGGTATGGTGCATTTTTATGTTGTGTATTTAGATGA GTAAAGAGGAGAGTGTGATAAATGGCCAGACTACGCAGCGATGCCACAAT AGTAACCTAATACGACACTAGAAAACACGTCACGTGTGAAAAGGTAAATT CTCAGTAAGTTGAAGATATGTTATGTTATAGGATNTATATCCGCATGTAC CAACACCAAAAAAAACAAAG
quality values	Open. Hide. 6 6 10 8 8 8 8 8 14 32 32 33 28 30 27 25 37 19 22 20 24 24 28 39 44 31 20 22 19 19 22 29 23 10 13 10 11 11 22 30 31 33 28 33 33 33 30 48 48 35 35 34 34 43 43 43 34 34 43 44 48 48 43 48 39 43 43 36 42 48 43 42 42 42 42 47 50 50 50 50 51 68 68 68 68 57 57 57 57 57 59 59 57 57 59 59 59 50 48 48 47 47 47 59 59 57 57 43 43 43 57 57 57 57 42 42 35 44 47 35 43 35 47 47 59 59 68 68 68 59 59 44 50 47 59 57 68 57 57 57 57 59 57 57 59 59 59 59 44 44 43 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 59 59 59 59 54 54 54 54 59 59 47 54 54 57 59 59 54 54 48 48 54 54 43 43 42 42 39 48 48 47 47 48 48 48 59 48 48 48 48 48 48 48 48 47 46 40 40 32 34 18 23 20 3 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3 0 3 3 0 0 3 9 8 8 8 8 8 12 8 10 10 13 12 13 7 9 8 8 8 8 8 8 10 8 8 8 8 9 8 8 8 6 6 10 8 11 9 10 11 12 12 15 15 14 10 9 9 9 8 8 8 8 8 6 6 8 8 8 8 8 8 6 8 8 8 10 10 8 8 6 6 7 12 12 22 13 19 17 28 29 29 28 28 33 30 18 15 8 6 6 8 3 0 3 8 6 8 8 8 8 8 8 8 8 9 10 10 8 8 8 8 11 13 23 18 15 11 8 6 6 8 10 10 9 8 8 8 10 8 8 8 8 8 10 10 10 10 8 10 8 10 8 8 12 12 8 8 8 8 10 8 10 10 15 11 8 8 8 8 8 11 10 10 9 8 7 7 8 14 13 20 13 13 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 10 11 11 11 9 9 9 9 10 10 12 11 10 10 8 8 8 8 8 8 6 6 8 8 13 8 8 9 9 10 10 19 10 10 8 8 8 8 8 8 8 8 15 15 15 15 14 13 17 13 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 10 9 9 9 9 9 9 10 10 10 8 8 6 6 8 8 6 6 10 8 8 9 12 10 10 8 8 8 8 10 9 9 9 9 9 8 12 8 8 8 8 8 6 6 8 6 8 10 9 8 8 8 8 8 8 10 9 8 8 8 8 8 8 10 9 8 8 11 12 16 11 14 13 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 8 8 8 8 9 10 9 8 8 8 8 8 9 12 11 10 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 9 9 9 9 9 13 11 10 10 10 8 8 6 6 8 10 7 6 8 6 8 8 8 8 11 9 10 13 10 8 8 6 7 6 6 6 11 10 10 9 9 9 9 9 9 8 8 7 7 8 8 10 10 9 8 8 8 8 8 8 11 11 12 11 9 9 9 9 9 12 13 12 12 10 13 10 10 10 10 10 11 11 9 9 9 11 10 9 10 10 10 9 9 8 8 8 8 8 8 8 8 10 8 8 8 8 10 10 11 12 8 8 8 6 6 10 10 14 13 17 10 10	Open. Hide. 6 6 8 8 6 6 6 6 6 6 3 0 3 10 15 17 11 17 3 0 3 17 21 24 24 26 31 19 24 10 9 9 9 9 9 12 15 24 28 24 24 33 32 27 16 13 13 19 11 13 21 21 28 28 22 21 12 10 9 9 8 11 11 11 11 12 11 12 14 18 18 16 14 15 15 14 14 18 16 11 11 13 11 8 8 6 6 6 8 8 8 8 8 8 8 10 10 10 10 10 8 8 8 8 9 9 10 10 8 8 8 9 9 10 11 11 11 14 9 9 9 9 9 9 9 8 8 10 8 8 7 7 8 8 11 11 3 0 3 8 8 6 6 8 10 10 10 8 8 8 8 8 9 10 11 9 10 10 10 10 10 11 11 12 10 10 10 10 10 8 10 8 8 8 8 8 8 9 9 9 10 9 9 9 10 10 9 9 8 8 8 8 9 9 11 11 11 8 8 8 8 8 8 12 10 10 9 8 6 6 6 6 8 8 9 9 9 9 8 8 8 10 8 8 10 8 8 6 6 6 8 13 10 10 10 9 9 9 8 8 8 8 8 8 8 8 8 9 7 7 7 8 6 8 7 6 8 8 6 8 8 8 8 8 10 8 8 12 10 10 10 10 11 11 10 8 7 7 6 8 8 10 11 11 9 9 9 8 8 8 6 6 8 10 8 8 9 9 9 9 3 0 3 6 6 6 6 6 6 6 9 9 9 9 11 11 11 12 10 10 12 8 8 8 8 8 9 10 10 9 8 8 8 8 8 8 8 8 8 7 7 6 8 6 6 6 6 11 11 10 10 10 8 8 8 8 10 10 6 6 10 8 8 9 9 10 10 8 11 10 10 9 9 8 8 8 8 8 8 13 13 8 8 6 6 8 8 8 8 8 8 8 13 10 8 6 6 8 8 8 8 8 8 8 8 8 8 8 11 10 10 9 9 9 6 6 6 6 8 8 8 8 8 8 11 11 12 17 16 12 12 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 6 6 7 7 8 8 10 9 9 9 9 8 10 8 8 8 8 8 10 10 6 6 6 6 9 11 11 11 11 8 8 8 6 6 6 6 6 8 10 14 14 17 14 16 11 9 9 11 11 11 9 9 9 11 10 8 8 8 8 11 10 10 10 10 10 6 6 8 8 9 8 8 8 6 7 8 6 6 8 8 10 11 11 10 9 9 9 9 9 10 10 9 10 11 11 10 13 10 10 10 8 8 8 10 10 8 8 8 8 8 8 8 9 11 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 10 9 10 8 8 8 8 10 10 10 8 8 8 10 8 9 8 8 6 6 8 8 8 8 9 8 12 9 9 8 8 8 8 8 8 11 11 11 11 10 9 8 8 8 8 8 8 8 8 8 10 10 11 8 8 6 6 8 8 6 7 9 8 11 11 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 6 7 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 10 9 9 10 10 10 11 9 9 12 10 8 8 11 11 15 8 8 8 8 8 8 8 6 8 8 8 8 8 8 8 8 8 8 11 11 8 8 6 6 8 8 8 10 8 8 6 6 6 6 11 12 11 8 8 8 8 8 7 6 8 8 8 8 8 8 8 8 10 9 9 11 12 8 8 8 6 8 8 8 6 6 8 8 8 6 6 6 8 7 8 8 7 7 9 8 10 8 8 8 8 8 8 8 8 8 8 9 9 9 10 10 8 8 6 6 8 8 8 9 9 10 9 9 10 10 8 8 8 8 8 8 8 10 11 11 10 10 8 8 6 6 8 8 8 8 8 8 8 9 9 8 8 8 8 8 8 9 9 8 8 8 8 8 8 10 9 10 11 17 3 0 3 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 13 16 19 20 10 11 10 10 8 10 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no177_k02.b1 MSMg01no177_k02.b1 CHROMAT_FILE:
MSMg01no177_k02.b1 PHD_FILE: MSMg01no177_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:14 2005
         (176 letters)



>mm_chr11_67419991_67420566
          Length = 576

 Score =  311 bits (161), Expect = 1e-89
 Identities = 168/171 (98%), Gaps = 2/171 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtttatctgctcaactcaacatatacttattgagccttaaccatgtaccgt 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtttatctgctcaattcaacatatacttattgagccttaaccatgtaccgt 264

                                                                       
Query: 65  gctgaatggcctggcccctaaactgcttatttgctcttagtgggaacaggtcttaaagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgaatggcctggcccctaaactgcttatttgctcttagtgggaacaggtcttaaagct 324

                                                              
Query: 125 ttgtgtccatgctttgagggaactggagtgtgtgtgtgtgtgtgtatgtgt 175
           |||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 325 ttgtgtccatgctttgagggaactggagtgtgtgtgtgtgtgt--atgtgt 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information