Query= MSMg01no177_o07.b1 MSMg01no177_o07.b1 CHROMAT_FILE:
MSMg01no177_o07.b1 PHD_FILE: MSMg01no177_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:33 2005
(422 letters)
>mm_chr11_21566607_21567428
Length = 822
Score = 793 bits (410), Expect = 0.0
Identities = 416/418 (99%)
Strand = Plus / Minus
Query: 5 gaattccataactccaattttatcacttctttaaaaaacattcacagaagagaaatggcc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattccataaatccaattttatcacttctttaaaaaacattcacagaagagaaatggcc 563
Query: 65 tcattcaaagactgagaatccaaatgttatagcatcaagggtgtccagggctggggctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcattcaaagactgagaatccaaatgttatagcatcaagggtgtccagggctggggctgg 503
Query: 125 ggatatggctcattgtttaggactgcttgctgtgaaagaaagagaatcagactacagctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggatatggctcattgtttaggactgcttgctgtgaaagaaagagaatcagactacagctt 443
Query: 185 tgctctcttaaaactatttttctccttttaaaaaagtttatatgagtggtttaagaaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgctctcttaaaactatttttctccttttaaaaaagtttatatgagtggtttaagaaagt 383
Query: 245 catacatgaaattgttaaattgtttcatcgattgtttaagaagacaaaaaacaagagtat 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 catacatgaaattgttaaattgttccatcgattgtttaagaagacaaaaaacaagagtat 323
Query: 305 atttgctagttgctgaaatcaaaattctaaattgtatttatagcttcaaagccaagtatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atttgctagttgctgaaatcaaaattctaaattgtatttatagcttcaaagccaagtatg 263
Query: 365 gctatgtatgattggaagttcaacatgagtgtgtgtggaatgggagttagggagaagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctatgtatgattggaagttcaacatgagtgtgtgtggaatgggagttagggagaagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_o07.g1 MSMg01no177_o07.g1 CHROMAT_FILE:
MSMg01no177_o07.g1 PHD_FILE: MSMg01no177_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:33 2005
(498 letters)
>mm_chr11_21531598_21532495
Length = 898
Score = 911 bits (471), Expect = 0.0
Identities = 494/507 (97%), Gaps = 9/507 (1%)
Strand = Plus / Plus
Query: 1 agcatcgggtcaacacctcttcaacctagcctgcatccccttattgcacctcctgcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatcgggtcaacacctcttcaacctagcctgcatccccttattgcacctcctgcaaca 260
Query: 61 acagcctccaaaaaataaaatttagcactagcattaatgctgtttgttgcttatcatcat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcctctaaaaaataaaatttagcactagcattaatgctgtttgttgcttatcatcat 320
Query: 121 gcaggatattgttatttttcttccgtttttttttttttt---------ttttttttttgg 171
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gcaggatattgttatttttcttccgttttttttttttttttgtttttgttttttttttgt 380
Query: 172 ggagctccaccaaaaatgctccactgaacgtttctcaatggatctcccactttcaggccc 231
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 381 ggagctccaccaaaaatgctccactgagcgtttctcagtggatctcccactttcaggccc 440
Query: 232 catgttggacaccacctgtacctgtccagcagccatgaattaactgggttacctgaaaag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgttggacaccacctgtacctgtccagcagccatgaattaactgggttacctgaaaag 500
Query: 292 ggggctggaaatgaaaagggtggggcacaagagcaggatgaagtgatcaaggctcaaagt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggctggaaatgaaaagggtggggcacaagagcaggatgaagtgatcaaggctcaaagt 560
Query: 352 ttaatagtcaccactgtgtttatatagggagaggccacagaccatcctttgtttcagctg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatagtcaccactgtgtttatatagggagaggccacagaccatcctttgtttcagctg 620
Query: 412 gatttcaaccatggcaagcacttaatgtttatcaagcctgctcaaggcttggggaagggc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatttcaaccatggcaagcacttaatgtttatcaagcctgctcaaggcttggggaagggc 680
Query: 472 ataccattttcagtagttctctgaaga 498
|||||||||||||||||||||||||||
Sbjct: 681 ataccattttcagtagttctctgaaga 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
