BAC Information

Click to search

BAC

Clone NameMSMg01-178C15
Chromosome11 (Build37)
Map Location 22,533,269 - 22,533,550
singlet/doubletsinglet
Overlap genenone
Upstream geneAV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827
Downstream geneLOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178C15.T7 (MSMg01no178_c15.b1)MSMg01-178C15.TJ (MSMg01no178_c15.g1)
ACCAG372332AG372333
length719706
length of high quality
(start - end)
234 (129 - 362)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no178_c15.b1 PHD_FILE: MSMg01no178_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:53 2005CHROMAT_FILE: MSMg01no178_c15.g1 PHD_FILE: MSMg01no178_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTCGTCTCTCCTGGAGTTGTGGTTTATATACAAAGCATCCTAA
AAAAAAAAAAAAAAAAAATAAACCCGCGCTCATGAGTTAAGGGTTGGCTG
CCAGCTGATAGACTCTTGAGTGATGACTGGGTAACAAGGGCTCTGATTTT
GTCAATGGATTAAGTTTTTGATGAATTTGTAAGTTGATGGCACAGGGGTA
GGTGGGGCATGTCCTTATGGGATGTGATGGTTTAAATATGCTTGGCCCAG
GGATTGGTACTATTAGGAGGGATGACCTTATTAGAGTAGGTCTGACCTTG
TTGGAGGAAGTGTGTTTTTGTACGACCGGGCTTTGAGACCCTTCTCCTAG
ATGCCTGGAAGCCAGCCCCCCCGCTGCCTTTGTAACAAGATGTAGATTTT
CAGCTCTTTCTCCAGCATCATGCCTGTCTGGACACTGCCATGCTTCTTGC
CTTGATGATAATGTACTGACCCTCTGAACCTATAAGCCACCCCCAATTAA
ATGCTGTCCTTATAAGAATTGCCTTGGTCGTGGAGNCTGTTCACAGCACA
GAAACCCTGACTAACACAGAGGAACTAGTTTGTTGGGTCCCCATGCTTAT
TCTCTCATGGGCTTCATTACATGTCGCCATTCCTATAATTTTGTTTTATC
TCCCATGTTTCCCGCCGCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGTACCCACTCCCTCTTCTGCAATG
TCCCTGCAGCCTTAGGAGAGCGGGTTAGTTGAGTCTGTGGTAACCATTGC
CCACTGCAGACAAACATCAGAGACACTTCTTTGGTGACAACTAAAAGGCT
ACTATTAGCATCTAGGGATTAGAAGCCAGAGATGTGGCTTCTTAAACCAC
CCAGAAGCACCCGGCACTGCCTAACGACTGGGTAGTACTTGGTCTGAAGT
GCCCACAGAGAAGCTGATCTGGACCTGCTCACAGCATCCTCCTGGCCATT
TGCTTTCTGTATTAGTGCCCGNTCGNCCCGAGTCCTGGGGGCGGGGTGTG
GGGTGCACATCCCCCCCGAAGAAAAACAAAGAACAGTCTGTGCTGCATCC
ATAAATTCTTGGAAATACCACAAGAATGCTGCAGCATGAACAGTGCTCAC
TGGCATTGTTTTGCAACAGGCTTGGTGCTGAGCACTTTACATATTTTTAT
CTTGCCATTTTCATACGTCAGACTTTGAGCTATTAATTACCCATATTTTA
TAGGTTGTGGAATGGAAGCATGACTGATCTCCTGACGTTACAGAGCTCTT
CAAAGAAAGCTGGCTTTCTAGATTGTCCCCACTCTGTATCTCCTTCCCCT
CTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_c15.g1 MSMg01no178_c15.g1 CHROMAT_FILE:
MSMg01no178_c15.g1 PHD_FILE: MSMg01no178_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:53 2005
         (285 letters)



>mm_chr11_22532903_22533587
          Length = 685

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtacccactccctcttctgcaatgtccctgcagccttaggagagcgggttagttgag 60
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 648 tcagtacctactccctcttctgcaatgtccctgcagccttaggagagggggttagttgag 589

                                                                       
Query: 61  tctgtggtaaccattgcccactgcagacaaacatcagagacacttctttggtgacaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctgtggtaaccattgcccactgcagacaaacatcagagacacttctttggtgacaacta 529

                                                                       
Query: 121 aaaggctactattagcatctagggattagaagccagagatgtggcttcttaaaccaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 528 aaaggctactattagcatctagggattagaagccagagatgtggcttcttaaagcatcca 469

                                                                       
Query: 181 gaagcacccggcactgcctaacgactgggtagtacttggtctgaagtgcccacagagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaagcacccggcactgcctaacgactgggtagtacttggtctgaagtgcccacagagaag 409

                                                     
Query: 241 ctgatctggacctgctcacagcatcctcctggccatttgctt 282
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgagctggacctgctcacagcatcctcctggccatttgctt 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)