BAC Information

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BAC

Clone NameMSMg01-178E06
Chromosome11 (Build37)
Map Location 52,631,966 - 52,632,257
singlet/doubletsinglet
Overlap geneFstl4
Upstream genePhf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178E06.T7 (MSMg01no178_e06.b1)MSMg01-178E06.TJ (MSMg01no178_e06.g1)
ACCAG372403AG372404
length698655
length of high quality
(start - end)
292 (43 - 334)---
definitionCHROMAT_FILE: MSMg01no178_e06.b1 PHD_FILE: MSMg01no178_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:01 2005CHROMAT_FILE: MSMg01no178_e06.g1 PHD_FILE: MSMg01no178_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTTCCGAGAGGATCCGCGGAATTCATTTTTCTCCTCAATCTGAAAAA
TCAGAAGACAAAATCAAAGAAAGGGTTGGTCAGACCATTCACGATCCCCG
CTGATGGCTCTAGGGAATAGTCCTCCCATGCCTCTTCCTAGCCAGTGCTT
GCCAGCAATGCCCTGCTCTGTCCTCACATGGTACTCCCCTTCTGTGTCTA
TAGAGGATGTTTGCACTGCCATTCATGGGACAAAAGCCAAAACTGATCCA
CTATGACTTTATCTTAACTTGGTATGTCTATTGTCTATAGAGATCTTATT
AATTAGGTCTCTATTTAACAGAAGGTCATGTTCACAAATTCCGGCTTATT
ATTTCACTATGTTATATTTTTTTTGTCACTCTGTATCCCCCCTTGATAAC
AGAGTCTCAAAATATAGCTGCACATTCAGCCCCTAACACCAACTTATTTG
AACCTGACATCCTCTCATCTATGCATCCTCCTCTTACCTTTTCTATTTCC
ATCACACGTCATTGCACTAACGAATAACATATTGTATTTTTTATCCCTTA
CACGTCACCTTTTCACCGATTTTTTTTTTTACACTTATTCCTCCTATAAC
CCCATAGATTCTTGTCCACCCCACTATTATTTTTCTTTTTGCACGACCCC
CCAGGCTCCCCCAATCTACTATTCTTTTTTATTACCTTCCTCACCATG
GGCGCCGCCTGTTCCCCGAATTTATGTGACACTATAGAATTTATCCGCGA
GAATTCCATCCATCCATCCATACCATCCATTCCAATTCCCATTTCCCCAA
TTTCCCTCCAATTTTCCCTACAAAACTTTATTTCAATTCCCCCCCCTTCC
ACCTTTCTTTTNCCTCCATCCCACCCATTCCTGGTNGTGTTTTCCATTGT
GGCCCTTTTAATTTTTTTCCCTTAAAAAAAATTTTCCCTTCTTCTTGAAA
TATTCTAAAGGATCCCGCGTTAACCATACCAAAAAACACGGCAAAAAGGC
CTATTATTTATATATATATTTATATAATTTTACTACCCCTCACATAAAAA
ACTTTAATACATTACTTTATAAATTTTTTCCCCATATAATAATAATTCTT
TGCACCCCTTTTCCTTAAACAAAAATCACAATTATAATACTATAATAAAT
ATACTATAAAACTAATTATATTATAAATTTATTCTAACATTATCCCATAA
CAATAAAATATTATTTTATATCCCTATTCCATTTTACATATTCATTCATT
TCCNTAAAAAAATATATCAATTATCAAAACATTTAATTATAATATTCTTT
TAACCCAACACCATTTTATATACAAAAATAACACACTTTCACTGCATCTT
ATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_e06.b1 MSMg01no178_e06.b1 CHROMAT_FILE:
MSMg01no178_e06.b1 PHD_FILE: MSMg01no178_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:01 2005
         (292 letters)



>mm_chr11_52631766_52632457
          Length = 692

 Score =  487 bits (252), Expect = e-142
 Identities = 282/292 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaaaatcagaagacaaaatcaaagaaagggttggtcagaccattcacgatccccgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctgaaaaatcagaagacaaaatcaaagaaagggttggtcagaccattcacgatccccgct 433

                                                                       
Query: 61  gatggctctagggaatagtcctcccatgcctcttcctagccagtgcttgccagcaatgcc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 432 gatggctctagggaatagtcctcccacgcctcttcctagccagtgcttgccagcaatgcc 373

                                                                       
Query: 121 ctgctctgtcctcacatggtactccccttctgtgtctatagaggatgtttgcactgccat 180
           |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 372 ctgctctgtcttcacacggcactccccttctgtgtctatagaggatgttcgcactgccat 313

                                                                       
Query: 181 tcatgggacaaaagccaaaactgatccactatgactttatcttaacttggtatgtctatt 240
           ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 312 tcatgggactaaagccaaaagtgatccagtatgactttatcttaacttggtatgtctatt 253

                                                               
Query: 241 gtctatagagatcttattaattaggtctctatttaacagaaggtcatgttca 292
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 252 gtctatagagatcttattaagtaggtctctatttaatagaaggtcatgttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)