BAC Information

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BAC

Clone NameMSMg01-178I12
Chromosome11 (Build37)
Map Location 5,075,844 - 5,076,122
singlet/doubletsinglet
Overlap genenone
Upstream geneSf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
Downstream geneKremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178I12.T7 (MSMg01no178_i12.b1)MSMg01-178I12.TJ (MSMg01no178_i12.g1)
ACCAG372589AG372590
length751754
length of high quality
(start - end)
277 (37 - 313)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no178_i12.b1 PHD_FILE: MSMg01no178_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:21 2005CHROMAT_FILE: MSMg01no178_i12.g1 PHD_FILE: MSMg01no178_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAA
AAATTTCCATTAAAAAGCAGCAGCAGCAGCACGCCTTTAATCCCAGCACT
TGGGAGGCAGAGGCAGGCGGATTCCTGAGTTCGAGGCCAGCCTGGTCTAC
AGAGTGAGTTTCAGGACAGCCAGGGCTCAAGAACTCAAGAATGTGTCTGA
AAGCAATAGGTTCTTGCTGTCATGTTCTGGATGGTAACCAACAGTATTGA
CTATAGCCTGTAATAGACACAGGGAGCAAAATTTCCCCAAAGTGCCAGTG
ACCTCATGATGATGATTGGGTTTTGGCAAGTACCTTGGACTTAGGGCTGT
TCTCTTCTGGCACACGCCCCCCTGACTTCTCTAGTACATTTGATCCTATT
ATCCTTCCCCCCCTATATTTCCTTTCTACATTTATTTATTTACCCATGCC
TGTCAATTTATTTGAGCCTCGTAATCATATTCGTACTTAAATATTTCTCT
TCATTAACCCATTCTTCCCTTTACATTTTTCCCTTTTATTCCCCCCTATT
TTTAAACCCTCATATTATCTCTTTTCTTTTTCTTTTCTCCCCCCTCCCCC
TCCTCTTTCCCTTTTTTTTTCTTTTCCCCTTTTCTTCCACTTTTTCACCC
TCATTTTATAACACCCTTTACACCTTTTTACACTACACTTAACCTTACCT
TATTATCCCCACATTCTATATTTTTTTTTTTTTTTTTTTTTCTTACCATT
N
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGGAGTGACAGAGTTTCAAA
GACTAAGAAACAGCAGACCAACATAGCTGCTGGTTCTGGGAAAGCCAGAG
TCTACCCTGAGCCTAGAGCCTTTGACATCACTCAGTGACAGATCCCAACC
ACGGTATTAGACAACTGTGGCCACAGATCCACACAGACCACTCATGGCTT
CCCATGGCCTTCCAGGGCTGAATCACATGGGAGTCAGGGCCAGCGCCCAT
GGGGAGCCCTCCAGCCACCTGTCACTGTGTTCAGAAACCCATACTTTCTG
GGTTTCTGTGGTTTCTTCGCGCCGCCCTGTGTGTCTGTCTGTCTGTATGT
ATATCTGTCTGCCCCCCTGTCTCTGACCCTGTCTCTGTCTCTGTGCGCAT
GTGTGCTCCATGTACCCCCACCGATTCTTTGTGCTTTCGCCCCTTTGCCC
TTCAATATATGCACCTAGACTGCGATCTTTCTCTTATTTACTATCCTTTT
TATTTACTTTTCCTTCCTCCCTCCATCATTTTTCCTTCTCGAATAATTTT
CCTTCTCCCGCGCCTTTATACCTTTTAGTTCTTATCCATGTGCATCTTTC
CCCCCCAACCTCTCCCTTTTTCTATATTTTCTGAGAAGCCTTCCCCACTC
CCGTCTTCTCCATAAACCTTTCGTGGCTTGTGTTTTCTCCTCCTCATTTA
TATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_i12.g1 MSMg01no178_i12.g1 CHROMAT_FILE:
MSMg01no178_i12.g1 PHD_FILE: MSMg01no178_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:21 2005
         (283 letters)



>mm_chr11_5075644_5076326
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaggagtgacagagtttcaaagactaagaaacagcagaccaacatagctgctggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaggagtgacagagtttcaaagactaagaaacagcagaccaacatagctgctggttc 260

                                                                       
Query: 61  tgggaaagccagagtctaccctgagcctagagcctttgacatcactcagtgacagatccc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgggaaagccagagtctaccctgagcctagaacctttgacatcactcagtgacagatccc 320

                                                                       
Query: 121 aaccacggtattagacaactgtggccacagatccacacagaccactcatggcttcccatg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 aaccacggtattagacaactgtggccacagatccacacagagcactcatggcttcccatg 380

                                                                       
Query: 181 gccttccagggctgaatcacatgggagtcagggccagcgcccatggggagccctccagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttccagggctgaatcacatgggagtcagggccagcgcccatggggagccctccagcc 440

                                                  
Query: 241 acctgtcactgtgttcagaaacccatactttctgggttt 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgtcactgtgttcagaaacccatactttctgggttt 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)