Query= MSMg01no179_c18.b1 MSMg01no179_c18.b1 CHROMAT_FILE:
MSMg01no179_c18.b1 PHD_FILE: MSMg01no179_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:07 2005
(485 letters)
>mm_chr11_4588532_4589416
Length = 885
Score = 837 bits (433), Expect = 0.0
Identities = 469/481 (97%)
Strand = Plus / Plus
Query: 5 gaattcagccagtctgcaaagtccatgccctctgcccgtcagcttcctgcttctctctag 64
|||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 205 gaattcagccagcctgaaaagtccatgccctccgcccatcagcttcctgcttctctctag 264
Query: 65 ttggtacttgaactgggaacaaataaagtatttgcttaacatggactagggaggttcctg 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ttggtacttgaactgggaacaaataaagtatttgcttaacacggactagggaggttcctg 324
Query: 125 accgccttgattctaaacatggttcttctgctgatacgatttataattgaaatcattctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accgccttgattctaaacatggttcttctgctgatacgatttataattgaaatcattctg 384
Query: 185 taaacagagggccagaggaaggaggaaataggaagctgggcagaatacagttttaccatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacagagggccagaggaaggaggaaataggaagctgggcagaatacagttttaccatt 444
Query: 245 tctactctaccacagcctctatccatggagggagttgtctcctaggagggcccagtggga 304
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tctactttaccacagcctctatccatggagggaggggtctcctaggagggcccagtggga 504
Query: 305 aaggcttcattaatcaatcaaacatcacacggaattgccaccggaggctggctggtagtg 364
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 aaggcttcattaagcaatcaaacatcacacggaattgccaccggaggctggctgttagtg 564
Query: 365 gcccctgctgctggacaagagggagacagatctgtgcagacaccaaggacagggaagtga 424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 gcccctgctgctggacaagagggagacggatctgtgcagacaccaaggacagggaagtga 624
Query: 425 agaggaatcagttgttcagaataaggtgtgagatgagataagagctgcccaggagtgcct 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 agaggaatcagttgttcagaataaggtgtgaggtgagataagagctgcccaggagtgcct 684
Query: 485 g 485
|
Sbjct: 685 g 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_c18.g1 MSMg01no179_c18.g1 CHROMAT_FILE:
MSMg01no179_c18.g1 PHD_FILE: MSMg01no179_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:07 2005
(507 letters)
>mm_chr11_4712441_4713347
Length = 907
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%)
Strand = Plus / Minus
Query: 1 taaggccagcctgatccacttacccagttctgggagagccaggactacacaaacggaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 taaggccagcctgatccacttacccagttctgggagagccaggactacacaaacggaccc 520
Query: 61 tgtcttaaaacaaaacaaaacaaaaaacaatgggactctactctgaagtatcaaggacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtcttaaaacaaaacaaaacaaaaaacaatgggactctactctgaagtatcaaggacag 460
Query: 121 tagctaaatgcaattcagttaagaaattgagtgcatataaaagcacagtggaagagctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tagctaaatgcaattcagttaagaaattgagtgcatataaaagcacagtggaagagctga 400
Query: 181 agatgaaagctcataatggggcaggtcatggaagcgttagctgctgggtgtgctgggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agatgaaagctcataatggggcaggtcatggaagcgttagctgctgggtgtgctgggcca 340
Query: 241 gagaagggtttaggttttgactaaatatttggtagctgtgtaatgaatatgttgatcagc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gagaagggtttaggttttgactaaatatttggtagctgtgtaatgaatatgttgatcagt 280
Query: 301 gcccaatgtgatgctatacacctttaatcccagctcttgagagccagatgtacatgggtc 360
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 279 gcccaatgtgatggtatacacctttaatcccagctcttgagaggtagatgtacatgggtc 220
Query: 361 tctgtgagtttaaggccagcctggtctacatagcaaattccaggcaagtcaagtctgtcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tctgtgagtttaaggccagcctggtctacatagcaaattccaggcaagtcaagtctgtcg 160
Query: 421 aatgagtaagtctagaaacagggaaagagagatatctattaaaaagtgattgttttagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aatgagtaagtctagaaacagggaaagagagatatctattaaaaagtgattgttttagtc 100
Query: 481 agagactctgagggtcatacctca 504
||||||||||||| ||||||||||
Sbjct: 99 agagactctgaggttcatacctca 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
