XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTT
GTGAGGCCAATATTCTTGGAGTCCTGCTGCTATTTTAACACCATTTGCTT
CAATTCAACTTTTAAATAAAAGCATACCTTAAGAGAACAGGCTCAGCTAG
GCTGCCTAGGTTAGATTCTGAGCTCTACCTTGTACTAGTTTCATGATCAC
AGGCAAGTCACTTAGTGTCTCTACTCCTCTGCTTCCTTGTCTGCAGACCA
TGTCTCCCATGTAAGTGGGTCCACTATGAGAATAAATAAGTTAATATTTA
TAAAGTAATTAAGATAGTAAATTTTAACTGTGTTTACATAAAAATGCCAA
ATATTTTAAGCATGAAAACTATGCTTTGAAAAGAATAACAGCTGGTTCAT
GCAATGACCGCCACAATATTTTGGAAGTATTTTAATATTTTACCAAAATA
TCACAGGTTCAATAAGACATGAGCTAAGTTCCACATCTTGTATGCTTCTC
TCAGTTCCTATAAATAACAGCCACTCTTTGTAGCCACTTGGTAGACAGTT
CTGGATATTCAGAATGACAGAGACTTTTAATGATGGTGGCTTCCAAGGTT
TACAATATAGAACTGGTCTGAATTATTTTTTGTCTGAAGTTTGAGTAATC
TTCCCATCATTCCTCCTACCTTTGTGTCTCTCCTCAAAATCATTCAAGAG
TTTCAAAAGACTGTTTACTCTACATG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTAGTCACTGCACTGAATGGTTGGACAGTAAT
GCCTAGGAATAAAACCGCTAGGACTTCCCTTGCTAAAAGCAGCTCAAACA
GACCTAAACTCCACGGACTACAAATCCTCAAGGTCATACTGCTGACCTGA
ACTTCATTTTTCCCACCCTTCTAATTGGCTGTGACAAACTGGCTCACACC
TGGTGATTTCCCACTCACTAAGGATGGAACACATGACTGAGCCTTTGAGA
GGAGTCAGTGTGCTGGGCCAATGAGCCCCCCAAACAATGATGAATGATTC
AACAAAGGGGCCTTGCTATATCAAATCTATCCACTAATGGGACATTTTCT
GTTTAATAACCTTCTCATGGGAGTAAACACATTTTGAGGAACCCCCACCC
TTATGCCATGTTGGCTGATGGGAACAGCTCACCATTGAGGCCTGCATCTT
CCCACAGACATTGCTTCACAGAGGNGCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTAGGGAGACAGGGTTTCTCTGTGTAGCCCTGGCCGTCCTGGAA
CTCACTCTGTAAACCAGGCTGGACTCGAACTCAGAAATCCACCTGTCTCT
GCCTCCCAAGTGCTGGGATTAAAGGAATGCACCACCATGCCCTGCTTTTT
TTTTTTTTCCCCTTTTTAAATGGG

Query= MSMg01no179_j17.b1 MSMg01no179_j17.b1 CHROMAT_FILE:
MSMg01no179_j17.b1 PHD_FILE: MSMg01no179_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:39 2005
         (662 letters)



>mm_chr11_46859366_46860427
          Length = 1062

 Score = 1172 bits (606), Expect = 0.0
 Identities = 645/658 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttgtgaggccaatattcttggagtcctgctgctattttaacaccatttgctt 64
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcagttgtgaggctaatattcttggagtcctgctgctattttaacaccatttactt 264

                                                                       
Query: 65  caattcaacttttaaataaaagcataccttaagagaacaggctcagctaggctgcctagg 124
           ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct: 265 caattcaacttttaaataaaaacataccttaagagaacagtctcagctaggctgccaagg 324

                                                                       
Query: 125 ttagattctgagctctaccttgtactagtttcatgatcacaggcaagtcacttagtgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagattctgagctctaccttgtactagtttcatgatcacaggcaagtcacttagtgtct 384

                                                                       
Query: 185 ctactcctctgcttccttgtctgcagaccatgtctcccatgtaagtgggtccactatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctactcctctgcttccttgtctgcagaccatgtctcccatgtaagtgggtccactatgag 444

                                                                       
Query: 245 aataaataagttaatatttataaagtaattaagatagtaaattttaactgtgtttacata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataaataagttaatatttataaagtaattaagatagtaaattttaactgtgtttacata 504

                                                                       
Query: 305 aaaatgccaaatattttaagcatgaaaactatgctttgaaaagaataacagctggttcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatgccaaatattttaagcatgaaaactatgctttgaaaagaataacagctggttcat 564

                                                                       
Query: 365 gcaatgaccgccacaatattttggaagtattttaatattttaccaaaatatcacaggttc 424
           |||||||| |  | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 gcaatgacaggaagaatattttggaagtattttaatattttaccaaaatatcacagattc 624

                                                                       
Query: 425 aataagacatgagctaagttccacatcttgtatgcttctctcagttcctataaataacag 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 aataagacatgagctaagttccacatctagtatgcttctctcagttcctataaataacag 684

                                                                       
Query: 485 ccactctttgtagccacttggtagacagttctggatattcagaatgacagagacttttaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccactctttgtagccacttggtagacagttctggatattcagaatgacagagacttttaa 744

                                                                       
Query: 545 tgatggtggcttccaaggtttacaatatagaactggtctgaattattttttgtctgaagt 604
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgatggtggcttccaaggcttacaatatagaactggtctgaattattttttgtctgaagt 804

                                                                     
Query: 605 ttgagtaatcttcccatcattcctcctacctttgtgtctctcctcaaaatcattcaag 662
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 ttgagtaatcttcccatcattcctcctacctttgtgtctctcctcagaatcattcaag 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_j17.g1 MSMg01no179_j17.g1 CHROMAT_FILE:
MSMg01no179_j17.g1 PHD_FILE: MSMg01no179_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:40 2005
         (437 letters)



>mm_chr11_47005185_47006021
          Length = 837

 Score =  797 bits (412), Expect = 0.0
 Identities = 426/431 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggacttcccttgctaaaagcagctcaaacagacctaaactccacggactacaaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctaggacttcccttgctaaaagcagctcaaacagacctaaactccacggactacaaatcc 548

                                                                       
Query: 61  tcaaggtcatactgctgacctgaacttcatttttcccacccttctaattggctgtgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcaaggtcatactgctgacctgaacttcatttttcccacccttctaattggctgtgacaa 488

                                                                       
Query: 121 actggctcacacctggtgatttcccactcactaaggatggaacacatgactgagcctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actggctcacacctggtgatttcccactcactaaggatggaacacatgactgagcctttg 428

                                                                       
Query: 181 agaggagtcagtgtgctgggccaatgagccccccaaacaatgatgaatgattcaacaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agaggagtcagtgtgctgggccaatgagccccccaaacaatgatgaatgattcaacaaag 368

                                                                       
Query: 241 gggccttgctatatcaaatctatccactaatgggacattttctgtttaataaccttctca 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 367 gggccttgttatatcaaatctatccactaatgggacattttctgtttaataagcttctca 308

                                                                       
Query: 301 tgggagtaaacacattttgaggaacccccacccttatgccatgttggctgatgggaacag 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 307 tgggagtaaacacattttgaggaacccccacccttttgccatgttggctgatgggaacag 248

                                                                       
Query: 361 ctcaccattgaggcctgcatcttcccacagacattgcttcacagaggngctttttttttt 420
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 ctcaccattgaggcctgtatcttcccacagacattgcttcacagaggtgctttttttttt 188

                      
Query: 421 ttttttttttt 431
           |||||||||||
Sbjct: 187 ttttttttttt 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)