BAC Information

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BAC

Clone NameMSMg01-179L07
Chromosome11 (Build37)
Map Location 117,985,433 - 118,126,788
singlet/doubletdoublet
Overlap geneDnahc17, Pscd1, Usp36
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1
Downstream geneTimp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179L07.T7 (MSMg01no179_l07.b1)MSMg01-179L07.TJ (MSMg01no179_l07.g1)
ACCAG373406AG373407
length716735
length of high quality
(start - end)
559 (41 - 599)285 (69 - 353)
definitionCHROMAT_FILE: MSMg01no179_l07.b1 PHD_FILE: MSMg01no179_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:47 2005CHROMAT_FILE: MSMg01no179_l07.g1 PHD_FILE: MSMg01no179_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,126,233 - 118,126,788)(117,985,433 - 117,985,717)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTC
ACCTTTCATCCCCGCACTCTGGAGGCAGAGGCAGGCTGATGTCTCTGTGA
GTTCGAGGCCAGCCTGGCTTACGGAGCTAGTTCAAAGACAGCCAGGGCTG
CACAAACCTTGTCTCAAACCCCACATCTGCACCAAACTCTTAGGTGTGAA
GGCGGCTGGGTGGGGTCAGGAGAGAGGTGGCATGTGGGCAGATCTCCTGA
GTGACTCTCTCTGTCCACCGTCTACAGGACTGCTGCACCTGCCCCCCGAC
CGTCCACCCACCCCCACTCTGCATCTCTGTCCAGTAGTAGTGCCAAGCCC
TTAGGGACATCAGAGCCACAGAGCTGCCGCCCCTCTGCCTGGACACCCCT
GCCTCAGGTCAACGGACACTTCACGTCCCACTTACACCAACTGCCAGAGG
CCAGCGAGGCCCTACACAGCCCCTCCAAAAAGAGGAAAAAGACCCCTAAT
GGAGATCCCCAGAGACTGGGCATCGACACGCTCCTCCCACAGTGCCTCAG
GGGAGCACCTGCAGCAGCACGCAGGAAGAGAAAGAAGAGGTGCTCGGAGG
GTGAGGGTGCCACAGCTCCCAAGCAGGAAGGCCAATTTCAGGACCAGTCT
TGGAGTTCCGGGAGCCAGAATGAAGAGGGTACGCAGCCCCAGGTAAATGG
TCATCAAGTGATTCAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCACGGCACGGGCGGCCTGTCCTTTTAGAAGG
GAGAGGAAGAGAGGAGCCTGAGTGGCTAGAGGCGGCCACGGTTGCTGAGA
GGCCCAGGCTCCACGAGCCCACAGGTACCTTAAAGAAAAGCTTCATGTTG
GCACAGCAGAAGTCGTAGGCTTGGAAGAGCCCCTTGAGGACGCTCACCGA
CAGGGAGATGTTGCCCAGGACCTCCTCGATCTCCCCCTGCAGGCCCTTCA
GCACCTCGTCCGGGCTCATGTAGGTTCTAGTCTACACAGAGGGAAAGACG
GGCATTTTTTTTCGCCCCCGCCCCCCCCATCTGGCGGCCATCCCTCCTGG
AGTGATCTGGACACCCGCAAGAAGAACAGTCCTCCCAAGACTCCTCTCCT
GTTCAGGCTACAGCAGACTAGGGGTCATCAGACATGGGAGACATATGGTG
TTTTCTTCGTCCTATGGATAGGCTACAAGCAGGATTTTTTTCTTTTTTAG
ATTCATTTATCGCATGTAACCTCACTGTAATTGTTTTCCAACCTTTTCTT
ACTATTTTTTCTTCATTTTCCATTTGTATCGTTTGTCAACTTCCTTTATC
TCTTTCTCCTCATCTTTTTTCTCCTCATCTCCTTGTTTTTTATATTCTAT
GGTCTCCCCCAACCCTTGAAAATTTACCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_l07.b1 MSMg01no179_l07.b1 CHROMAT_FILE:
MSMg01no179_l07.b1 PHD_FILE: MSMg01no179_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:47 2005
         (559 letters)



>mm_chr11_118125905_118126863
          Length = 959

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctttcatccccgcactctggaggcagaggcaggctgatgtctctgtgagtt 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ggaattcacctttcatcccagcactctggaggcagaggcaggctgatgtctctgtgagtt 825

                                                                       
Query: 64  cgaggccagcctggcttacggagctagttcaaagacagccagggctgcacaaaccttgtc 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 cgaggccagcctggtttacggagctagttcaaagacagccagggctgcacaaaccttgtc 765

                                                                       
Query: 124 tcaaaccccacatctgcaccaaactcttaggtgtgaaggcggctgggtggggtcaggaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tcaaaccccacatctgcaccaaactcttaggtgtgaaggcggctgggtggggtcaggaga 705

                                                                       
Query: 184 gaggtggcatgtgggcagatctcctgagtgactctctctgtccaccgtctacaggactgc 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaggtggcacgtgggcagatctcctgagtgactctctctgtccaccgtctacaggactgc 645

                                                                       
Query: 244 tgcacctgccccccgaccgtccacccacccccactctgcatctctgtccagtagtagtgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgcacctgccccccgaccgtccacccacccccactctgcatctctgtccagtagtagtgc 585

                                                                       
Query: 304 caagcccttagggacatcagagccacagagctgccgcccctctgcctggacacccctgcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 caagcccttagggacatcagagccacagagctgccgcccctctgcctggacacccctgcc 525

                                                                       
Query: 364 tcaggtcaacggacacttcacgtcccacttacaccaactgccagaggccagcgaggccct 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcaggtcaatggacacttcacgtcccacttacaccaactgccagaggccagcgaggccct 465

                                                                       
Query: 424 acacagcccctccaaaaagaggaaaaagacccctaatggagatccccagagactgggcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acacagcccctccaaaaagaggaaaaagacccctaatggagatccccagagactgggcat 405

                                                                       
Query: 484 cgacacgctcctcccacagtgcctcaggggagcacctgcagcagcacgcaggaagagaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cgacacgctcctcccacagtgcctcaggggagcacctgcagcagcacgcaggaagagaaa 345

                           
Query: 544 gaagaggtgctcggag 559
           ||||||||||||||||
Sbjct: 344 gaagaggtgctcggag 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no179_l07.g1 MSMg01no179_l07.g1 CHROMAT_FILE:
MSMg01no179_l07.g1 PHD_FILE: MSMg01no179_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:47 2005
         (285 letters)



>mm_chr11_117985233_117985917
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacggcacgggcggcctgtccttttagaagggagaggaagagaggagcctgagtggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 ccacggcacgggcggcctgtccttttagaagggagaggaagagaggagggtgagtggcta 260

                                                                       
Query: 61  gaggcggccacggttgctgagaggcccaggctccacgagcccacaggtaccttaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggcggccacggttgctgagaggcccaggctccacgagcccacaggtaccttaaagaaa 320

                                                                       
Query: 121 agcttcatgttggcacagcagaagtcgtaggcttggaagagccccttgaggacgctcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcttcatgttggcacagcagaagtcgtaggcttggaagagccccttgaggacgctcacc 380

                                                                       
Query: 181 gacagggagatgttgcccaggacctcctcgatctccccctgcaggcccttcagcacctcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagggagatgttgcccaggacctcctcgatctccccctgcaggcccttcagcacctcg 440

                                                        
Query: 241 tccgggctcatgtaggttctagtctacacagagggaaagacgggc 285
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tccgggctcaggtaggttctagtctacacagagggaaagacgggc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)