Query= MSMg01no179_o09.b1 MSMg01no179_o09.b1 CHROMAT_FILE:
MSMg01no179_o09.b1 PHD_FILE: MSMg01no179_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:01 2005
(464 letters)
>mm_chr11_25551657_25552519
Length = 863
Score = 648 bits (335), Expect = 0.0
Identities = 402/435 (92%), Gaps = 21/435 (4%)
Strand = Plus / Plus
Query: 5 gaattccagacattgtcttctattttaacactctgtaaacaaaggtctgtcaatgcccag 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagacattgtgttctattttaacactctgtaaacaaaggtctgtcaatgcccag 264
Query: 65 tctatagtggagtaccttgaacattccagacaagatagaatgctgtcccaggagcatttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctatagtggagtaccttgaacattccagacaagatagaatgctgtcccaggagcatttc 324
Query: 125 ccagcagagaaggacggcaactgagatgttactcttgaacatcctgtcttctggcagggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagcagagaaggacggcaactgagatgttactcttgaacatcctgtcttctggcagggt 384
Query: 185 tttctgcagctcatatcactaacggagcctagtcagagggaaaaaaaaattataggtgta 244
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 tttctgcagcccatatcactaacggagcctagtcagagggaaaaaaaa-ttataggtgta 443
Query: 245 tcagtacatgctgcctgcctgcctgcctgtctgcctatctgtctgtctgtctacctgcct 304
||||||||||||||||||||||||||||| |||||| ||| ||| ||| || |||||||
Sbjct: 444 tcagtacatgctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcct 503
Query: 305 gtctgcctatctgtctgtctgtctgtctgtctctctctctctgtgtgtgtgtgtgtgtct 364
|||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 gtctgcct----gtctgtctgtctgtctgtctctctctct------gtgtgtgtgtgtct 553
Query: 365 caaatccccctttctctcactttgtctgtatctctctc--tct--------ttctttctc 414
|||||| | |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 554 caaatctctttttctctcactttgtctgtatctctctccttctctctctagttctttctc 613
Query: 415 tctctctctctctct 429
|||||||||||||||
Sbjct: 614 tctctctctctctct 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_o09.g1 MSMg01no179_o09.g1 CHROMAT_FILE:
MSMg01no179_o09.g1 PHD_FILE: MSMg01no179_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:01 2005
(404 letters)
>mm_chr11_25672341_25673144
Length = 804
Score = 735 bits (380), Expect = 0.0
Identities = 398/404 (98%)
Strand = Plus / Minus
Query: 1 acaaaattgcagaaagtaaaaaaaagaaggaattcatcattatctacaatatcaccagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acaaaattgcagaaagtaaaaaaaagaaggaattcatcattatctacaatatcaccagtg 545
Query: 61 acgcatctgaatgatgagttcagtattcctgcaaagttaagatcatgggtctggtaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acgcatctgaatgatgagttcagtattcctgcaaagttaagatcatgggtctggtaatta 485
Query: 121 ggttgatatatatttatttaaaggttgtttttctgctctggaggcgtaagagttaagggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggttgatatatatttatttaaaggttgtttttctgctctggaggcgtaagagttaagggt 425
Query: 181 tttagagaagatggattctgtattactgtgtgagttggggctaatcatggccaccattga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tttagagaagatggattctgtattactgtgtgagttggggctaatcatggccaccattga 365
Query: 241 gttctggattctattttaaagggagtaacaaaccaattatgggttcctcatgagagtcga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gttctggattctattttaaagggagtaacaaaccaattatgggttcctcatgagagtcga 305
Query: 301 tcagctgatgtacatggaagagcttatcaaatagaactcatcgcgcgccatgcagtcagc 360
|||||||||||||||||||||||||| |||||||||||||| | | | ||||||||||||
Sbjct: 304 tcagctgatgtacatggaagagcttagcaaatagaactcattgtgtgtcatgcagtcagc 245
Query: 361 gtgggtgaatgctcaccttgagttgtttcagtctcagcttcatc 404
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 gtgggtgaatgctcaacttgagttgtttcagtctcagcttcatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
