BAC Information

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BAC

Clone NameMSMg01-180B24
Chromosome11 (Build37)
Map Location 42,698,089 - 42,698,493
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180B24.T7 (MSMg01no180_b24.b1)MSMg01-180B24.TJ (MSMg01no180_b24.g1)
ACCAG373693AG373694
length817758
length of high quality
(start - end)
---406 (62 - 467)
definitionCHROMAT_FILE: MSMg01no180_b24.b1 PHD_FILE: MSMg01no180_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:17 2005CHROMAT_FILE: MSMg01no180_b24.g1 PHD_FILE: MSMg01no180_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATCCAAAATT
TATTCTCCACAGAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCACCCCCCCCCCCACCACTTTGCACTCCCTGTTATTTATTTT
ATTTTTTCCCCCCCCCCTTTAAAAAAAAAATTATAGTCCTAAATCCATCC
ATATTAATTCTCTCACCCCAATTCTTTGTTCATAATTTCCTCTAACCCCT
TAATTTTTCCCATTTATTCTTCCTTAACTTATCCATTAACACCATATTTT
ATTCTTATATATCTTTATTTTTAAACACCATTTTTTTACACTCTCTTTTC
TCATCTACTATATTCTTTTATACCTTCTTTCTTTTTCAATTTTTATCTAT
CCAACATTTTTCCATTTACCACTTTTTACTTTCTTACTCTTACATACTCC
TAACATCATAATAATTTTTCACTCTCCATCTCTCTCCTCTTTTTCTTTTC
CAACAAATTTTTTTCCTATCAACAACACCATACTTCTTTTATAACTCTTT
TCAATAACAAATCATCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTATCTGTGCAGCTAGAAATATATAATTGAAGTATAAT
GGCCCAGAATTTCGTATTAGGACTCACTCAGAGACATGTGCTTGGGAGGT
TTGGCAAGCTCACATTGCATTGCATACTCAGAGCAGAGTTGACACACATC
TGTCTGGGTCACTGATATTAGCACTAAGAGTGTTACTACCCTCTAGGATG
CTTTAGAAGATTCTGTGCACAAGCAAGCCATCTGCCTTCCAAACTGGGCT
AGTCTCAACAAGTATATCTCTTTAAATGAGAGAGCAATTTCCTGTGGATC
AGCTAATGTCTTTATCTCATCCCATGCCTAATGGTGGTGACTTCTTAATG
CCTCCCTATTTCATCAAAATGATGTCTTGGCTTTTCTCACAGTCAAGTCT
GCTTTGTTCTTCTACAATATGTACTTGGCACTGAGCTGTACATACACAGC
CTCTACCTCATGAAAATAGCTGGCCTATCATATAACAGAAAGTGGTGCTT
TCAGCTCCTATATCTCTCATTGTTCTTATGGTAAATCGAGAGACGGCCAG
CGTACTATTTTTTCTATTCTGCCACGCGCTAAATTCTTAAAACATCCCGC
CATTTACCATACACCATACTCCCACGAGGTACAATCCCCTCGTCTGCCTC
CCTACTCAAGTTTTATCCCATTATTCTTAGTCTGCTTGTTATATTTACAC
TCAACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_b24.g1 MSMg01no180_b24.g1 CHROMAT_FILE:
MSMg01no180_b24.g1 PHD_FILE: MSMg01no180_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:17 2005
         (406 letters)



>mm_chr11_42697889_42698693
          Length = 805

 Score =  731 bits (378), Expect = 0.0
 Identities = 399/406 (98%), Gaps = 1/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatctgtgcagctagaaatatataattgaagtataatggcccagaatttcgtattagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 605 tctatctgtgcagctagaaatatataattgaagtataatggcccagaattt-gtattagg 547

                                                                       
Query: 61  actcactcagagacatgtgcttgggaggtttggcaagctcacattgcattgcatactcag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 546 actcactcagagacatgtgcttgggaggtttggcaaactcacattgcattgcatactcag 487

                                                                       
Query: 121 agcagagttgacacacatctgtctgggtcactgatattagcactaagagtgttactaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 486 agcagagttgacacacatctgtctgggtcactgatattagcactaagagtgttaccaccc 427

                                                                       
Query: 181 tctaggatgctttagaagattctgtgcacaagcaagccatctgccttccaaactgggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctaggatgctttagaagattctgtgcacaagcaagccatctgccttccaaactgggcta 367

                                                                       
Query: 241 gtctcaacaagtatatctctttaaatgagagagcaatttcctgtggatcagctaatgtct 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 366 gtctcaacaagtatatctctttaaatgagggagcaatttcctgtggatcagctaatgtct 307

                                                                       
Query: 301 ttatctcatcccatgcctaatggtggtgacttcttaatgcctccctatttcatcaaaatg 360
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 306 ttatctcatcccatgcctaatggtggtgacttcttaatgccttcttatttcatcaaaatg 247

                                                         
Query: 361 atgtcttggcttttctcacagtcaagtctgctttgttcttctacaa 406
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atatcttggcttttctcacagtcaagtctgctttgttcttctacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space:   316012
Effective search space used:   316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)