BAC Information

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BAC

Clone NameMSMg01-180D21
Chromosome11 (Build37)
Map Location 53,100,282 - 53,100,581
singlet/doubletsinglet
Overlap geneHspa4
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205
Downstream geneZcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D21.T7 (MSMg01no180_d21.b1)MSMg01-180D21.TJ (MSMg01no180_d21.g1)
ACCAG373778AG373779
length713708
length of high quality
(start - end)
300 (377 - 676)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no180_d21.b1 PHD_FILE: MSMg01no180_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:26 2005CHROMAT_FILE: MSMg01no180_d21.g1 PHD_FILE: MSMg01no180_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGCACTTGCAAGAGGCACAGGGAGAAGAATGGCAGCCAAGTGCAAGAC
CACGTTGGTCTACACTGCACGCTCAGGCCAGCCCACACTACACAGTGAGA
TCCTGTCTCCAAAACTAGAAAAAGAAAAAGGAAGAAAACCAAAGAAAATG
AAAACTAGATTTCTGAGCATGGTATCATACTACAATCCCAAACACATGGG
AGACAGAAGCAGAAACATTAACTACTGAGGCAGCCTGAACTATACAGCAA
GACTGTGTCAAAGCAGGAACTTCTCAAAACACCACGACCACACAACACAG
TAACAATTTGTACTTGCCCCACCACAGTTTTCCTCTCTAGTTCTTAAGGC
AGCTCGAGCCCAACTCACCGAGACAACACAGCAGTCTACCACAACTCACC
GAGACAACACAGTCTACCACAGGCTTCTTAAGAACACTCTCTGCTGTCTC
CTTCAGTTTCGACAAAAGCATGGCAGTCACTTGTTCCGTGGTAAAATTCC
TCTCTTCTTCCATATATGTAACCTGCAACAAAACAAAAGGATCCAATTTT
AGTCCACTTCATGTCCTAGTCAATGGGGCAGTATCTCAGGAGGGGACTGA
AGAACGTTATCTTTACAAAGAATGTTACCTTTTTGTTTAATATACATGAC
ATTTAGCACAAGA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTATGTAGACCAGGCTGTCTCAAACTGACAAG
AGAGCCGCCCACGCCCGCTTCTCGTGTGCTGGGATTAAAGGTGCGCTCCA
GCACACTCTGCTAAAACTTTTTTTTTTTTTTAAATTATTGTATGTGTCTG
GGTGTTTTGCCTGCATGAATGTTTGTGCCACCTGTATGTGCCTGGAGCTC
ATGAAGGCCAGAAAAGGACATCAAATCCCTGGAACTCTGAGGTACCCCAT
GGGTGCATGGCACTGAGCCCAGGTCCTCTGGGAAAGCAGCCAGTGCTCTG
TCTGATTTGCTGACCCACCCTTCCAGCCCTTGGAACAAACTTTCAACACA
ACATTTGACAATGGATTGGATATTTACCTCAGGTCTTCACAATTGGTTTT
TCACTTGGAGTTTTGTTTGTTTGGATTCTTTTTCTTGGAGCATGCATATA
TGGTGTGCATGTGTGAGTGTGCACATACATGTGCACATACATGTGGGGGC
AGAGCCCAGAGGTCCTCAAGCATTCTCCACAGTACTTTTTTTTTTTTTTA
AAGATTTAATTATTGGCTATATGTAAAGACACTGTAGCTGTCTTCAGAAT
CTCCACAATAGGGTGTCAGATCCCGTTACAGAAGGTTGCGAACCACTATG
TGTTTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d21.b1 MSMg01no180_d21.b1 CHROMAT_FILE:
MSMg01no180_d21.b1 PHD_FILE: MSMg01no180_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:26 2005
         (300 letters)



>mm_chr11_53100082_53100781
          Length = 700

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttcctctctagttcttaaggcagctcgagcccaactcaccgagacaacacagcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttcctctctagttcttaaggcagctcgagcccaactcaccgagacaacacagcagtc 260

                                                                       
Query: 61  taccacaactcaccgagacaacacagtctaccacaggcttcttaagaacactctctgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccacaactcaccgagacaacacagtctaccacaggcttcttaagaacactctctgctg 320

                                                                       
Query: 121 tctccttcagtttcgacaaaagcatggcagtcacttgttccgtggtaaaattcctctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccttcagtttcgacaaaagcatggcagtcacttgttccgtggtaaaattcctctctt 380

                                                                       
Query: 181 cttccatatatgtaacctgcaacaaaacaaaaggatccaattttagtccacttcatgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttccatatatgtaacctgcaacaaaacaaaaggatccaattttagtccacttcatgtcc 440

                                                                       
Query: 241 tagtcaatggggcagtatctcaggaggggactgaagaacgttatctttacaaagaatgtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tagtcaatggggcagtatctcaggaggggactgaagaacgttatctttacgaagaatgtt 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)