BAC Information

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BAC

Clone NameMSMg01-180F11
Chromosome11 (Build37)
Map Location 7,339,196 - 7,339,427
singlet/doubletsinglet
Overlap genenone
Upstream geneH2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180F11.T7 (MSMg01no180_f11.b1)MSMg01-180F11.TJ (MSMg01no180_f11.g1)
ACCAG373846AG373847
length729737
length of high quality
(start - end)
642 (37 - 678)232 (114 - 345)
definitionCHROMAT_FILE: MSMg01no180_f11.b1 PHD_FILE: MSMg01no180_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:33 2005CHROMAT_FILE: MSMg01no180_f11.g1 PHD_FILE: MSMg01no180_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAA
CTTTTTTTGACCTATTTAATTTAACAAGGGCCAGCTGTCTGACCCTTGGA
TTGGAATTGTCCATTGGATCATGGTGGTATCGCCAGTGAGTATACAACAA
GAGACAATGGTTCTTCCTGTCTCTCTGAGTCTATCAGCAGCAAATATTTC
AGTGGTGATAGATAAGCATTCCATCATGCCTGACTATTGATTGACAGGAC
CATTCATTCGCAGACTAAGTGCAAGCCTCTGAAGCTGCTGTCAGTCTGTG
ATGATTGTGGCTATGTTTTGCACAGGAGACATCATTTTGTCTGTCTTCTC
TTACATTCTTTTCCTCTTCCTTGATGTTGCCTGATTCTTAGAAAGGATAC
AACATCTTTAGTGCTAAACGCTCCTCACTTATACCCAGCATCGTGTGTAG
CCAAGAGTTTATCATTTATCACTTTTCATTGGAAAAAGATTAAAGCTAAG
AGTAACATTTGTGTGTAAGTTCAAATGTAATTATTTCGAAGGCAGTTTGA
TACTATGTCAGTTGAACTGAAAACCAGTATTCAGTTCTTCCAGGGTTCAT
GGCTTCCCCTGCCATGGATTTTCGACTAGGCTTATGGTATTATGCATGTA
TTCCCTTTGTGGAGCAGGCTTCAATTCCAATCAAAGAATGATTGGCTACC
CTATAACAGCGATATTATTATTGCATCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGAGCAAGAGGCCAGGGCACAGAAGTCTGGTCCA
AGTCAAATGCCCCCAGTCAGACAGACCTTATCTTGCTTCTGTGGAATGAA
GCAAAATCTTGAGCTCTAATATGTAAAGAATTCCAACCCTGGACACTAAC
CAGACATAGAAGATGCTGATCGGGTCATTTGTATCTGTTTGTCTCTGGGT
TTAGTGTCATAGGACCTTAGCTTCTAATTAATCCACTTGAAGTAATATCA
AGACAGCATAGTGTAGGATGATGGATGGCTGGGCTAGGTAGGATAAGTTT
TAGCTATCGCCCCACTAGTAATTATTTCTTATGTGGCCCAACAGCATTAG
GAACTAATGACCTAATAACATGGTATTTTAGCTAGGGTTATACTGCTGCT
ATAAAATACCATGACCAAAAGCAACTTGGGGGGTTGGGGGTGGGGAAAGC
AAGCCTGACCCCACTCTACCCCATCTCACAGTTTTTTATGTAATTTAACT
TTATATCTTACTTCCTTTAAATAACTTAACTTTGATTTTTCGCCCACATC
CCAAAAATAATTACCCCTCTAAATATTTTCTTTGCTCACTTTTTTCTCCC
CCTCTCTCCCACTTACTCTTTTTACCTCTTAATCCATTTCTTTATTATAT
CTTATTTTACTCTTCTCCCCTTTTCTTTTCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_f11.g1 MSMg01no180_f11.g1 CHROMAT_FILE:
MSMg01no180_f11.g1 PHD_FILE: MSMg01no180_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:33 2005
         (232 letters)



>mm_chr11_7338996_7339627
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcagacagaccttatcttgcttctgtggaatgaagcaaaatcttgagctctaatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagtcagacagaccttatcttgcttctgtggaatgaagcaaaatcttgagctctaatatg 373

                                                                       
Query: 61  taaagaattccaaccctggacactaaccagacatagaagatgctgatcgggtcatttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taaagaattccaaccctggacactaaccagacatagaagatgctgatcgggtcatttgta 313

                                                                       
Query: 121 tctgtttgtctctgggtttagtgtcataggaccttagcttctaattaatccacttgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tctgtttgtctctgggtttagtgtcataggaccttagcttctaattaatccacttgaagt 253

                                                               
Query: 181 aatatcaagacagcatagtgtaggatgatggatggctgggctaggtaggata 232
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 aatatcaagacagcagagtgtaggatgatggatggctgggctaggtaggata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)