BAC Information

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BAC

Clone NameMSMg01-180H15
Chromosome11 (Build37)
Map Location 113,953,753 - 114,122,937
singlet/doubletdoublet
Overlap geneLOC100041739
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2
Downstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180H15.T7 (MSMg01no180_h15.b1)MSMg01-180H15.TJ (MSMg01no180_h15.g1)
ACCAG373944AG373945
length762720
length of high quality
(start - end)
313 (38 - 350)500 (68 - 567)
definitionCHROMAT_FILE: MSMg01no180_h15.b1 PHD_FILE: MSMg01no180_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:43 2005CHROMAT_FILE: MSMg01no180_h15.g1 PHD_FILE: MSMg01no180_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,953,753 - 113,954,062)(114,122,581 - 114,122,937)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
ACCCGCGCTCTGTTCTCGCTTCATCAAACAGTCAGAACACTCTGAGAGAG
ATTAAGAGTATCCCCACGGACTGCCTTGACATTTTCTACAGAGAACATGG
ATTTCTTTTGTAATTGGGAAAGAAGTTAATTAAGCCTAAACAAATAATTA
TAATAAAAATAGCCCTTCAGAGGAAGAAATGTCAGAGCAACTCGAGTTTA
GAATGTTTATGGCGGGGAAGGTAGCCTGCCTCAGGTGTTGCCCTTCCCCT
TCCCATCAGGATACTCTGTCTTGGATACTGAAGTTTCCCTAAGAGGTGAA
GATTACGTTATTTGCCCCTAAAACTTCTCCGATAAGCTTGTTTGGGGAAG
TTGAGGGCTTTGTGAGAGAAAGCGTCGTGTTTGGGCTCTCGTCCCCCCCT
ATTTTATTATATTTCTTTCTCTTCCCCCCCCCCCTATCTTTATATTTCAT
TACACCCCACCTTCCTTTTTTCTCCTTTCAACTATATCGATATTTTTTAT
CTTTTCCCCCTCGCCCCCTATTTATTTTTTTTATTTTTTATTTACTTACA
CATTTACTCCCCTATTTTCTCTCTCCCCCCCATCCCCTTCCTCCCTCTCC
CCCTTATTTATACTTAACTCATTTTTTACCTCATTACACCCCCCCCCCCC
CCCCCCCCCCTTTATTTTTACCCCCTCTCCCCCCCCTCTTTTTTATACCC
CCCCCCCCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTAGCTTCGTTGCTTCTGAGAAAGGCTCAGAT
ATCTAGACAGCCACCGCATGCACGACATGCTCTGCATAAGCCACAGGGCT
TTGTTACACCCAGCTAGGTCACCTAAATGGCATCTTCTTCCCCCATTAGC
CCTGAAACACTCATGTCAAGTGAATTAGTCACCTACCACTACATAACAAA
CAGCCCCAAACTTAGTGGCTTAAAGCAGCCATTTATCAACTGTGACACTG
TGGGCTCAGCTGATCTGGAACATTCTACCAAGACAAGCTGAGTTCATTTA
TATAGTTGCTGGGCGGCTGAGACACTGGGCACTGGAGGCTGGCCTGTCCT
TTGTTGGCAGAATGACCAGGTAGCATGTGACTTGTCCTAGGGAGTCGTGA
ACAAATATCTGTTCACCTCAGATAGGACATCAATGACAGACTGAAGGAAT
GATTCGTACTCACATCCAGCTTGGTGAGCCTGTGGGGTTTGGGGGGGATC
CTTAGTGGAACATGGTGACCCAAACATGACTGCATCACCCCACCCACCCA
GTGTGAATGACCATTTATGAAAGTTGTTTCTCTGGAACTTCCTGTGAACA
TTCAAGTTTTTCAACTGAATGTATATTTACTCATAAATTGTTTTGATGCA
CCAATACCCTCCTAATTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_h15.b1 MSMg01no180_h15.b1 CHROMAT_FILE:
MSMg01no180_h15.b1 PHD_FILE: MSMg01no180_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:43 2005
         (313 letters)



>mm_chr11_113953550_113954262
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggacccgcgctctgttctcgcttcatcaaacagtcagaacactctgagagag 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggacccgtgctctgttctcgcttcatcaaacagtcagaacactctgagagag 263

                                                                       
Query: 64  attaagagtatccccacggactgccttgacattttctacagagaacatggatttcttttg 123
           |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attaagaggatcgtcacggactgccttgacattttctacagagaacatggatttcttttg 323

                                                                       
Query: 124 taattgggaaagaagttaattaagcctaaacaaataattataataaaaatagcccttcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taattgggaaagaagttaattaagcctaaacaaataattataataaaaatagcccttcag 383

                                                                       
Query: 184 aggaagaaatgtcagagcaactcgagtttagaatgtttatggcggggaaggtagcctgcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggaagaaatgtcagagcaactcgagtttagaatgtttatggcggggaaggtagcctgcc 443

                                                                       
Query: 244 tcaggtgttgcccttccccttcccatcaggatactctgtcttggatactgaagtttccct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaggtgttgcccttccccttcccatcaggatactctgtcttggatactgaagtttccct 503

                     
Query: 304 aagaggtgaa 313
           ||||||||||
Sbjct: 504 aagaggtgaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no180_h15.g1 MSMg01no180_h15.g1 CHROMAT_FILE:
MSMg01no180_h15.g1 PHD_FILE: MSMg01no180_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:43 2005
         (500 letters)



>mm_chr11_114122581_114123480
          Length = 900

 Score =  613 bits (317), Expect = e-180
 Identities = 347/357 (97%)
 Strand = Plus / Minus

                                                                       
Query: 26  gctcagatatctagacagccaccgcatgcacgacatgctctgcataagccacagggcttt 85
           ||||||||||||||||||||| |||| ||| |||||||||||||||| |||| |||||||
Sbjct: 357 gctcagatatctagacagccagcgcacgcatgacatgctctgcataaaccacggggcttt 298

                                                                       
Query: 86  gttacacccagctaggtcacctaaatggcatcttcttcccccattagccctgaaacactc 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttacacccagctaggtcacctaaatggcatcttcttcccccattagccctgaaacactc 238

                                                                       
Query: 146 atgtcaagtgaattagtcacctaccactacataacaaacagccccaaacttagtggctta 205
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 237 atgtcaagtgaatcagtcacctaccgctacataacaaacagccccaaacttagtggctta 178

                                                                       
Query: 206 aagcagccatttatcaactgtgacactgtgggctcagctgatctggaacattctaccaag 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aagcagccatttatcaactgtgacactgtgggctcagctgatctggaacattctaccaag 118

                                                                       
Query: 266 acaagctgagttcatttatatagttgctgggcggctgagacactgggcactggaggctgg 325
           |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct: 117 acaagctgagttcatttatacagttgctgggtggttgagacactgggcactggaggctgg 58

                                                                    
Query: 326 cctgtcctttgttggcagaatgaccaggtagcatgtgacttgtcctagggagtcgtg 382
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  cctgtcctttgttggcagaatgaccaggtagcatgtgacttgtcctagggagtcgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)