BAC Information

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BAC

Clone NameMSMg01-180I03
Chromosome11 (Build37)
Map Location 45,246,298 - 45,396,203
singlet/doubletdoublet
Overlap genenone
Upstream geneUblcp1, 3732413I11Rik, Ebf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180I03.T7 (MSMg01no180_i03.b1)MSMg01-180I03.TJ (MSMg01no180_i03.g1)
ACCAG373968AG373969
length722730
length of high quality
(start - end)		614 (44 - 657)422 (71 - 492)
definitionCHROMAT_FILE: MSMg01no180_i03.b1 PHD_FILE: MSMg01no180_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:46 2005CHROMAT_FILE: MSMg01no180_i03.g1 PHD_FILE: MSMg01no180_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,395,763 - 45,396,203)(45,246,298 - 45,246,719)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTTAAAGTCACATTTTAAAGAAGTGTGTGTGAGCAAGACAGAGAG
ACAGAGAGACACAGAGAGTCACACCCACACAGAGACAGAGACAGAGAGAG
ACAGAGAGACAGAGAAATAGAGAGAGACACACACAGACACAGACACACAC
AGACACAGACACACAGATACACACAGAGACAGAGAAACAGAGAACGTGTA
ACTGTATATGCACATCTGAGTGCAGGTGCCTATGGCAGACAGAAGAGGGC
GCCAGATCCCCTAGATCTTGAGTTAGGAGACTCCCAACATGAGTGATGGG
AAATAAACATTGGTCCTCTTCAAGAACGATACATGGTCTTATCCACTAAA
CCATCTCTACAACCCCTCCAAGGCCTGTTGTAGGATGAGTTTGTTATTCA
CTTGGGAAAGTTTATCAAGCTCCTCCTGTTTCCATTTGCTTGTGTTTTGG
AAGTGCTTTCTGTCTGATCAATACCTGATTTGTCCTTGTCTTCCTATTTG
ACATCCCCAAATTCCCCCATAGCTTTATCAGTCTGAGGATAGTTTGCTTG
TTTTACAAGGATATCAATGTCCAGCCATCCTCTGTGGTTAGGGTCCTCTC
TAAACTGTTCTCATTGTCTTTAGTCTTCTATAGGAACCTCGTGAGTAAGC
CAGTCCAGTGCTTACTGTCTCT

GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGTGGTCACAGATGGAGAAAGAAGTGTGT
GCCAGTGGCTTCAAACCATTGCTGTTGCTAGGATCTGAAACATCCCCCCA
AAGGTTCATGATTTGAATGCTGGGCACCCAGACTGTGAAGCCTTTAGGAG
GTGGAGTATGCCTGAAGGCAATAAGACATGAGAGGCAGTTCCCCAAAACT
GGCCTGCATTCTCTGCTTCCTGTATACCATGATGTAGGCTGTCAGCAGCA
TAGACTACCACCGTCACACACTGAGTCACCTCTGTCTGCCTTCCTTGTCA
CAAGGGATCTACATCTTTTTCAAACTTGGAGCCAAAATATATCTCTAAAT
GTCAGTGCTCCTGCCAGGTATTTGAGCCACAGCAACATAAACACAGCTTA
AGCAAATGTGAAGAGGCAAGAGGTACCACCGAATGTTCTACAGTGCATGG
AACGGGCCTCCATAACAAGACCCTGCTTTAATGCCTATAGGACACTTACA
GCTTCTTTTCGTTAAAAAAAAAAAAATCCGGGCAGGGCACCAACCGTATT
AACCTTTAAAGAATGGTTTGCCCAGCCCCTGAAACAGGGAGGCTTCTTAT
GGCTAAAATCTTTCCAATATGGGGGTCCTTTCCTCCCCTTATAAACCAAA
AGGAACCTCCTTTTGGTTTTCCCCTCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_i03.b1 MSMg01no180_i03.b1 CHROMAT_FILE:
MSMg01no180_i03.b1 PHD_FILE: MSMg01no180_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:46 2005
         (614 letters)



>mm_chr11_45395190_45396203
          Length = 1014

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Minus

                                                                        
Query: 174  atacacacagagacagagaaacagagaacgtgtaactgtatatgcacatctgagtgcagg 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 atacacacagagacagagaaacagagaacgtgtaactgtatatgcacatctgagtgcagg 955

                                                                        
Query: 234  tgcctatggcagacagaagagggcgccagatcccctagatcttgagttaggagactccca 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  tgcctatggcagacagaagagggcgccagatcccctagatcttgagttaggagactccca 895

                                                                        
Query: 294  acatgagtgatgggaaataaacattggtcctcttcaagaacgatacatggtcttatccac 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  acatgagtgatgggaaataaacattggtcctcttcaagaacgatacatggtcttatccac 835

                                                                        
Query: 354  taaaccatctctacaacccctccaaggcctgttgtaggatgagtttgttattcacttggg 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  taaaccatctctacaacccctccaaggcctgttgtaggatgagtttgttattcacttggg 775

                                                                        
Query: 414  aaagtttatcaagctcctcctgtttccatttgcttgtgttttggaagtgctttctgtctg 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  aaagtttatcaagctcctcctgtttccatttgcttgtgttttggaagtgctttctgtctg 715

                                                                        
Query: 474  atcaatacctgatttgtccttgtcttcctatttgacatccccaaattcccccatagcttt 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  atcaatacctgatttgtccttgtcttcctatttgacatccccaaattcccccatagcttt 655

                                                                        
Query: 534  atcagtctgaggatagtttgcttgttttacaaggatatcaatgtccagccatcctctgtg 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  atcagtctgaggatagtttgcttgttttacaaggatatcaatgtccagccatcctctgtg 595

                                 
Query: 594  gttagggtcctctctaaactg 614
            |||||||||||||||||||||
Sbjct: 594  gttagggtcctctctaaactg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no180_i03.g1 MSMg01no180_i03.g1 CHROMAT_FILE:
MSMg01no180_i03.g1 PHD_FILE: MSMg01no180_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:46 2005
         (422 letters)



>mm_chr11_45246098_45246919
          Length = 822

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggtcacagatggagaaagaagtgtgtgccagtggcttcaaaccattgctgttgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtggtcacagatggagaaagaagtgtgtgccagtggcttcaaaccattgctgttgcta 260

                                                                       
Query: 61  ggatctgaaacatccccccaaaggttcatgatttgaatgctgggcacccagactgtgaag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatctgaaacatccccccaaagtttcatgatttgaatgctgggcacccagactgtgaag 320

                                                                       
Query: 121 cctttaggaggtggagtatgcctgaaggcaataagacatgagaggcagttccccaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cctttaggaggtggagtatgcctgaaggcaataagacatgagaggcagttccccaaagct 380

                                                                       
Query: 181 ggcctgcattctctgcttcctgtataccatgatgtaggctgtcagcagcatagactacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctgcattctctgcttcctgtataccatgatgtaggctgtcagcagcatagactacca 440

                                                                       
Query: 241 ccgtcacacactgagtcacctctgtctgccttccttgtcacaagggatctacatcttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgtcacacactgagtcacctctgtctgccttccttgtcacaagggatctacatcttttt 500

                                                                       
Query: 301 caaacttggagccaaaatatatctctaaatgtcagtgctcctgccaggtatttgagccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaacttggagccaaaatatatctctaaatgtcagtgctcctgccaggtatttgagccac 560

                                                                       
Query: 361 agcaacataaacacagcttaagcaaatgtgaagaggcaagaggtaccaccgaatgttcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaacataaacacagcttaagcaaatgtgaagaggcaagaggtaccaccgaatgttcta 620

             
Query: 421 ca 422
           ||
Sbjct: 621 ca 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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