CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCCTTCTGCAGTAGTCAAGAGTCCAGTGCTAGGAAACAAGCCTT
CCATCAACCTTGATGTGTACCACGAGCTGATTCCTAGCCTAGGATACAGG
AAGGCATCTCCTCACAGAGTCTTGACAGTACCCAGTGGGTATAGAGCAGT
GGTTCTCAATCCAGGGGTCACACATCAGATAGCCTGCACATCCAATGTTT
GCATTATGATTCGTAAGAGTAGTAAAACGTCAGTTATGAAGTAGCAACAG
ATCATTTTCTGGTTGGGGGTTCACCACGCCATGAGGAACTGTAGTAAAAG
GGCCGGAGAATTGAGGTTGAGAACCACTGGTGTAAAGGACGATGTTTCAA
CTGATACAGGGCTGGACGCTGCCAGGAAGACTGTGTGAATGGAGCCTGGG
TAGCCAAAACCCAGTCCACATGGACTACACCAAGATGGCGCCGGTGACAT
GTAAAGGCAGGAAGACACGGGCATAAAACAACCAGAAAAATCCAGATGCT
CTTGACATATAAGCCAGTAGGAAGAGAAGAGCATTCCTGGGAGGCTGCCC
CAAATGGCCTCCAGATCGTTTGAAAAATACTGTGTTAGCGCCTTTTTTTT
TCTTCTAAAGACAAAGACTTTCACTTTCAAAGAATGTTCATTTCANAATA
ATCAGATTATC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGAAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTCCCGGAGGATCC
AGCAATACCTCTCTTGTGCATATATCCCCAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCC
TAAACACATGA

Query= MSMg01no180_o13.b1 MSMg01no180_o13.b1 CHROMAT_FILE:
MSMg01no180_o13.b1 PHD_FILE: MSMg01no180_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:16 2005
         (553 letters)



>mm_chr11_34952465_34953417
          Length = 953

 Score =  948 bits (490), Expect = 0.0
 Identities = 496/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 56  acccagtgggtatagagcagtggttctcaatccaggggtcacacatcagatagcctgcac 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 acccagtgggtatagagcagtggttctcaatccaggggtcacacatcagatagcctgcac 894

                                                                       
Query: 116 atccaatgtttgcattatgattcgtaagagtagtaaaacgtcagttatgaagtagcaaca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 atccaatgtttgcattatgattcgtaagagtagtaaaacgtcagttatgaagtagcaaca 834

                                                                       
Query: 176 gatcattttctggttgggggttcaccacgccatgaggaactgtagtaaaagggccggaga 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gatcattttctggttgggggttcaccacgccatgaggaactgtagtaaaagggccggaga 774

                                                                       
Query: 236 attgaggttgagaaccactggtgtaaaggacgatgtttcaactgatacagggctggacgc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 773 attgaggttgagaaccactggtgtaaaggacgatgtttcaactgatacagggctggatgc 714

                                                                       
Query: 296 tgccaggaagactgtgtgaatggagcctgggtagccaaaacccagtccacatggactaca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgccaggaagactgtgtgaatggagcctgggtagccaaaacccagtccacatggactaca 654

                                                                       
Query: 356 ccaagatggcgccggtgacatgtaaaggcaggaagacacgggcataaaacaaccagaaaa 415
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccaagatggcgccagtgacatgtaaaggcaggaagacacgggcataaaacaaccagaaaa 594

                                                                       
Query: 416 atccagatgctcttgacatataagccagtaggaagagaagagcattcctgggaggctgcc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atccagatgctcttgacatataagccagtaggaagagaagagcattcctgggaggctgcc 534

                                                                       
Query: 476 ccaaatggcctccagatcgtttgaaaaatactgtgttagcgcctttttttttcttctaaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccaaatggcctccagatcgtttgaaaaatactgtgttagcgcctttttttttcttctaaa 474

                             
Query: 536 gacaaagactttcacttt 553
           ||||||||||||||||||
Sbjct: 473 gacaaagactttcacttt 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)