Query= MSMg01no181_k14.b1 MSMg01no181_k14.b1 CHROMAT_FILE:
MSMg01no181_k14.b1 PHD_FILE: MSMg01no181_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:10 2005
(561 letters)
>mm_chr11_115345450_115346410
Length = 961
Score = 903 bits (467), Expect = 0.0
Identities = 521/561 (92%), Gaps = 35/561 (6%)
Strand = Plus / Minus
Query: 1 tggccttgaacttctggagatccgctagcctctgcctcccaatgctgggatctacatcat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 538 tggccttgaacttctggagatccactagcctctgcctcccaatgctgggat-tacatcat 480
Query: 61 ggaccaccatgctgggatcactttcttgaattctggaaatcctgtaccatactggtcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggaccaccatgctgggatcactttcttgaattctggaaatcctgtaccatactggtcagc 420
Query: 121 tgtgttaattaaaacacacataactgttaggcctaaaataaacctgctttatctcaaact 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtgtcaattaaaacacacataactgttaggcctaaaataaacctgctttatctcaaact 360
Query: 181 agaagagacactctgcctagggctcccaagtagctgggactgtgcacacccgacattata 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 359 agaagagacactctgcctagggctcccaagtagctgggactgtgtacacccgacattata 300
Query: 241 ctttactggaaaagaaaacgacaggggcggagaggtgcttcagaggttaagcctgactga 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctttactggaaaagaaaatgacaggggcggagaggtgcttcagaggttaagcctgactga 240
Query: 301 tctttaagggcccaggttcaattcagcaccaacatggcagctcacaactgtctatagtac 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tctttaagggtccaggttcaattcagcaccaacatggcagctcacaactgtctatagtac 180
Query: 361 cagttccaggggatccaacaccctcacacagacacacacgcaggccaaacaccaagcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cagttccaggggatccaacaccctcacacagacacacacgcaggccaaacaccaagcaca 120
Query: 421 cacacacacacacacacacacacacacacacacacacacacacacactaatgaatgaatg 480
||||||||||||||||||||||||| |
Sbjct: 119 cacacacacacacacacacacacac----------------------------------g 94
Query: 481 aatgaatgaatgaatgaatgaatgaatgaatgaatgaggaaaaacaactctcttaaatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 aatgaatgaatgaatgaatgaatgaatgaatgaatgaggaaaaacaactctcttaaatgt 34
Query: 541 caaagatattattaattacaa 561
|||||||||||||||||||||
Sbjct: 33 caaagatattattaattacaa 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_k14.g1 MSMg01no181_k14.g1 CHROMAT_FILE:
MSMg01no181_k14.g1 PHD_FILE: MSMg01no181_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:11 2005
(283 letters)
>mm_chr11_115199956_115200638
Length = 683
Score = 505 bits (261), Expect = e-147
Identities = 280/291 (96%), Gaps = 8/291 (2%)
Strand = Plus / Plus
Query: 1 tttcctgccaagcccagcctcagcctcggggttctactcaacagagaacactgtggttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttcctgccaagcccagcctcagcctcggggttctactcaacagagaacactgtggttga 252
Query: 61 tcacacccctctggatttcctgggtggagtcccttcacaagttagcaggttcacaccgac 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 253 tcacacccctctggatttcctgggcggagtcccttcacaagttagcaggttcacaccgac 312
Query: 121 ttttgctggtaagaagtcccagctctgaaag--------tgacagggcagtactcaagtg 172
|||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 313 ttttgctggtaagaggtcccagctctgaaagaggcccagtgacagggcagtactcaagtg 372
Query: 173 accctcactccctgggcaaaacatcaacccactttaggatgagaaattgagttcagaaat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 accctcactccctgggcaaaacatcaacccactttaggatgagaaattgagttcagaaat 432
Query: 233 gagctggcccagtcatggatagggagggagaggtggtccttggtgtgttca 283
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 433 gagctggcccagtcatggataggaagggagaggtggtccttggtgtgttca 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
