BAC Information

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BAC

Clone NameMSMg01-181M12
Chromosome11 (Build37)
Map Location 6,584,633 - 6,585,138
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd36, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3
Downstream geneLOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M12.T7 (MSMg01no181_m12.b1)MSMg01-181M12.TJ (MSMg01no181_m12.g1)
ACCAG374853AG374854
length725723
length of high quality
(start - end)		510 (44 - 553)549 (121 - 669)
definitionCHROMAT_FILE: MSMg01no181_m12.b1 PHD_FILE: MSMg01no181_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:20 2005CHROMAT_FILE: MSMg01no181_m12.g1 PHD_FILE: MSMg01no181_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCCCTGTTCGGTCCAGCTTTGCTCTTGATATTTAAATCTCAGGCC
CGGTGGTTTTATTTATTTTTTCCCTTTTAAGATGGCTTTATAGAAGACTT
GGTTTATGTATCTGCAGGGCAGCAATGTATTTGTCAGAAAGGTTTTAAAC
TATGTCTACCCATATAGAAAAGATGCTTGTCATTTAAGGAACCATGTTTG
TGGAAAGAAACTATACAATTGCCATTGTGGACATTTTGCTACTAGATTGC
CCCAGGGGGTGGTTGGGGTTTCTGTTGTTCCTGTGTTTCACTAATAAGAC
TCCCCAGGGATGGCTTCCTGTTTTCTTGCATTGTAAGGCTGGTGCTTATC
AGTCTGTTCACCTTGCACGGCTGGCCTCCTTTGGTCTCATAGTCACAGGA
TAGGTTCTCAGTGAGCAGCTGGTAGGATTGAGGGAAGGAATAGCCTTCCT
TTTATAAAGGGCACTTTCAAATAACTGCTCACTAGAGATTACTCCTGTGT
GTATTTCAGAATAACATAACTAATCTAAACTACCCCACTTAACATCAAAT
CCACAAAACCCCAGAGGGGATTCATGTGCAAGATCCGCTTTTTAAAGAGA
GTGTTTCACTATTGTCGTCCCTGCTGCATTTAAACTCCCACATGTCTTTC
TGCCTCTATCTCTGAATTTCTGCAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGGCTTGGGTCAAGTGACCTCTGCTTAG
CAATGGCCTCAATCTTTACCAGCTTCAAAAGCAACCAGATGAGCCAGGTG
GTGGTGGCACACTCCTCTAGTCCCAGCACTTGGGAAACAGAGACGAGCAG
ATCTCTGTGAGTTCGAGGCCAGACTGGTATTTAGAGCGAGTTCCAGGGCA
TCCAGGGCTACATAGACAAACCCTGTGTTGAAAAACCAACAAACGCTGGA
GAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAG
TTCAATTCTCAGCAACCACATGGTGGCTCACAACCATCAATAATGAGATC
TGGTTTTCTCTTCTGGCCTGCAGGCATATATGCAGGCACAATGTTGTATA
TGTAGTAAGTAAAATTTTTAAAAAAAGAGAGAGAGAGAAGAAGAAAGAAA
GAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGATAGGAAAAGTCAAGTAACCTCACCCAGCTGTG
AAGAGTTGAGATAATCACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m12.b1 MSMg01no181_m12.b1 CHROMAT_FILE:
MSMg01no181_m12.b1 PHD_FILE: MSMg01no181_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:20 2005
         (510 letters)



>mm_chr11_6584429_6585338
          Length = 910

 Score =  833 bits (431), Expect = 0.0
 Identities = 488/511 (95%), Gaps = 10/511 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccctgttcggtccagctttgctcttgatatttaaatctcaggcccggtggt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccctgtttggtccagctttgctcttgatatttaaatctcaggcccggtggt 264

                                                                       
Query: 65  tttatttattttttcccttttaagatggctttatagaagacttggtttatgtatctgcag 124
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tttatttattttttctcttttaagatggctttctagaagacttggtttatgtatctgcag 324

                                                                       
Query: 125 ggcagcaatgtatttgtcagaaaggttttaaactatgtctacccatatagaaaaga-tgc 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 325 cgcagcaatgtatttgtcagaaaggttttaaactatgtctacccatatagaaaagact-c 383

                                                                       
Query: 184 ttgtcatttaaggaaccatgtttgtggaaagaaactatacaattgccattgtggacattt 243
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtcatttaaggaatgatgtttgtggaaagaaactatacaattgccattgtggacattt 443

                                                                       
Query: 244 tgctactagattgccccagggggtggttggggtttctgttgttcctgtgtttcactaata 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctactagactgccccagggggtggttggggtttctgttgttcctgtgtttcactaata 503

                                                                       
Query: 304 agactccccagggatggcttcctgttttcttgcattgtaaggct----ggtgcttatcag 359
           |||||||||||||||||||||||||||||||||||||||||||     |||    |||||
Sbjct: 504 agactccccagggatggcttcctgttttcttgcattgtaaggcaaaaaggt----atcag 559

                                                                       
Query: 360 tctgttcaccttgcacggctggcctcctttggtctcatagtcacaggataggttctcagt 419
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttttcaccttgcacggctggcctcctttggtctcatagtcacaggataggttctcagt 619

                                                                       
Query: 420 gagcagctggtaggattgagggaaggaatagccttccttttataaagggcactttcaaat 479
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 gagcagctggtgggattgagggaaggaatagctttccttttataaagggcactttcaaat 679

                                          
Query: 480 aactgctcactagagattactcctgtgtgta 510
           ||||||| ||||||||||||||| |||||||
Sbjct: 680 aactgcttactagagattactcccgtgtgta 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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