BAC Information

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BAC

Clone NameMSMg01-182B12
Chromosome11 (Build37)
Map Location 87,996,611 - 87,996,845
singlet/doubletsinglet
Overlap geneCuedc1
Upstream geneTrim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1
Downstream geneMrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182B12.T7 (MSMg01no182_b12.b1)MSMg01-182B12.TJ (MSMg01no182_b12.g1)
ACCAG375072AG375073
length777765
length of high quality
(start - end)
236 (73 - 308)268 (44 - 311)
definitionCHROMAT_FILE: MSMg01no182_b12.b1 PHD_FILE: MSMg01no182_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005CHROMAT_FILE: MSMg01no182_b12.g1 PHD_FILE: MSMg01no182_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGCTAGTGACTGGGTCCCGTTGGGAGG
AGGGGACTACATGATGAGACACGGAGGATTTTGGGAAAGCACACCTGCGC
ATACAGCTGTACATGGATTTAAGTAGGTGATGTGTATGCTCACTCTTCCT
CAGGGTCACCCCGGGGGCTCCAAGCCTATGAGTGGAGAGGGAGGCCCACC
TCCGGCGCCAGGGCCCATGGCCTGTGACCAAGACAGCCGCTGGAAACAGT
ACCTGGAAGATGATAGAATTGCCCTCTTCCTGCCCAATGAGGAATTCATG
AATGATTTGTTTCGAAACCGGGACTTCCTCCCCGCCCTGCAGAGATTTGG
GCTTTTTTGTTTCTCCCCCCACAACATAGTTTTTTTGGCAGGCAGCCTCG
GTCCTCCCTCAGTACGCGTTTTGCTTCATGCGCCTTATCGCCCTTCCACT
TTCTAACCTGCTTCGCTCTTTTTCCTTCCCTGTGTTTAACCCATAAACCT
CCTTCTTCTTTTCTTTTATCTCCTCCTATCCCCCTTTTCCTTTCTCTTTC
CCCCCCATTTCACACCTTTCAATCTCATCTCCCTTTACGTCCCGTTTTCA
TTTTTCTTCTTCCTCCCTCTCCCTCTTTTCCCCTTCTCTTCTTCGCTCTC
CCTCCCTTTATTTTTTTTCCCTTTTCTCCCCCCCTTCTTTTNTCTTTTTT
CCACCCTCTTCTCCCACCCTCTTTTCG
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGCTCCTTCTCCAGCATCACGTCTGCCTGCATGCTACCATGCTTC
CTGCCATGATGACAATGGACTGAACCTCTAAAACTGTAAGCCAGCCCCTA
TTAAATGTTTTCCTTTATAAGACTTGCCTTGGTCATGGTGTCTCTTTTCA
GCAACAAAACCCTAACTAAGACAAATAGCCTGGAGTCCTTTCCTGTTCTC
TGTGTGTGGATGGAAATGTGATCAGCTTCTTATATCTTCCAGAACAATGT
TACCATCTGGGAGCCTATCATTCAACACATAAACCTATGAGGGACTTTTT
ATACTCTTTTCTTCACCCCCCCTCCAAGGTGTGATTCTTTTTACTTCTGT
GGATCCCCCCCCCCCCACAAATTAATATTCGACCTCTCGGCGCCACAACA
TTTATTAATCTTTATTTTCATCATCCCAACCCTCTAATATTTCTATCCTA
CTCCTACTAATACACACATATTACTTTTCTTTCATTTTTTTTTCCCCTCT
TTTTTCCTCTCCTTATATCTTAACTTCCTTCTATTATTTTTTCCCCTCTT
TCTTTTTTTACTTTTTTTTATCATCCCCTTTTTATTTTTTATTCTCCTTA
CTCTAAATCATTTTCCATACATTATCCTTTATTGTTTAACACTCCATCTC
TCCTTTTCTCGACAAATATAACAACAAAAATTCTATTTCTAAATACTTCC
CTAAATTATACATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_b12.b1 MSMg01no182_b12.b1 CHROMAT_FILE:
MSMg01no182_b12.b1 PHD_FILE: MSMg01no182_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:44 2005
         (236 letters)



>mm_chr11_87996411_87997045
          Length = 635

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctagtgactgggtcccgttgggaggaggggactacatgatgagacacggaggatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tggctagtgactgggtcccgttgggaggaggggactacatgatgagaca-ggaggatttt 259

                                                                       
Query: 61  gggaaagcacacctgcgcatacagctgtacatggatttaagtaggtgatgtgtatgctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggaaagcacacctgcgcatacagctgtacatggatttaagtaggtgatgtgtatgctca 319

                                                                       
Query: 121 ctcttcctcagggtcaccccgggggctccaagcctatgagtggagagggaggcccacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcttcctcagggtcaccccgggggctccaagcctatgagtggagagggaggcccacctc 379

                                                                   
Query: 181 cggcgccagggcccatggcctgtgaccaagacagccgctggaaacagtacctggaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cggcgccagggcccatggcctgtgaccaagacagccgctggaaacagtacctggaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)