BAC Information

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BAC

Clone NameMSMg01-182D10
Chromosome11 (Build37)
Map Location 49,697,973 - 49,698,311
singlet/doubletsinglet
Overlap geneMapk9
Upstream geneEG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2
Downstream geneRasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182D10.T7 (MSMg01no182_d10.b1)MSMg01-182D10.TJ (MSMg01no182_d10.g1)
ACCAG375160AG375161
length739716
length of high quality
(start - end)		340 (74 - 413)676 (41 - 716)
definitionCHROMAT_FILE: MSMg01no182_d10.b1 PHD_FILE: MSMg01no182_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:53 2005CHROMAT_FILE: MSMg01no182_d10.g1 PHD_FILE: MSMg01no182_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCAGATGTTCTAGAAGCACTCAGAAG
AACACAGAAGAAATATTCTAGAGAGTAGGGGTTCATTCTTGAATATTTTC
TGATTTAAAACTGCTCACCTGAAATTGATACTTTCAGATCCTGATCTGTA
AATTACTCAAGATTTGATAAGAGGCTGAGTTCTCTGTGTTGTTGCAGAAA
TGGAGTTGGGACGGTCATACCGTGGCTACCTGCGCTCAGAGCATTTTCTC
CCTTGAGCTTATTTTGTTAACGATTCATATCTTGTGTTCAGTTACTTTGG
GAGCTATGGAGTGTGTTCTAGGAGGAAACTTGATAGCTTTTATGAAAAGT
ACCATCTAATATCCCACCCTGCCTGCACCCGTTGCATCCTAATGGTTGGT
CTGATCATTGGAACCCTTAATGGACAATATTAATCTGAAATCTGAAATAA
GGATTAGCTTTGCATCATATATGTATATTTTCAGGTACAGAGCGCAAATG
CTAGTGTTGTTTGTGTGCTTACCACTTTCTTATATGTTCCCCGCCTTTCT
GCCTTCTGACATCCCGCAATTTCTCCCTTTTTTTATTTTTCTATCTCTCT
CGCTTTTTTTCCTCTTTGTTCCACATCCCCTTATTTTTTTTCCTTTTTTA
CCCACTCATTTTTTTTCTCTCATTTCTTTCCCTCTCTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCTGGATAAAGAAATGTAAAGAGAGTTATTAGGGCAATGATGATTTAGC
AGGGAAAGATCTCAGAGAAGAAAACTCTGGACTCGAGCCCAGGGCTTCCT
GGCCAGCAGAGTCGCCTGACACCCGCAAGGGCCCACACAGGATTCCCCAC
GGGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGGAGTCCA
GTTCGAACACCAGATATCTGGGTACCTTCCCTGCAAGAAGAGAGCTTTCC
TGCAGAGAATACTCTACCCACTGAAACCAAGGAGAGTGCTACCCTCCCAG
GTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGTACAAGCTCTTAACAG
AGACAACTACCACAGCTAGCTTCAGAGATTACCAGATGGCAAAAGGCAAA
CGTAAGAATCCCACTAACAGAAATCAAGACCACTCACCATCATCAGAACG
CAGCACTCCCACCCCACCTAGTCCTGGGCACCCCAACACAACCGAAAATC
TAGACCCAGACTTAAAAACATTTTTCATGATGATGATAGAGGACATCAAG
AAGGACTTTCATAAGTCACTTAAAGAATTACAGGAGAGCACTGCTAAAGA
GTTACAGGCCCTTAAAGAANAGCAGGAAAACACAGCCAAACAGGTAGAAG
TCCTTAAAGAAAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_d10.b1 MSMg01no182_d10.b1 CHROMAT_FILE:
MSMg01no182_d10.b1 PHD_FILE: MSMg01no182_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:53 2005
         (340 letters)



>mm_chr11_49697773_49698512
          Length = 740

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagatgttctagaagcactcagaagaacacagaagaaatattctagagagtaggggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagatgttctagaagcactcagaagaacacagaagaaatattctagagagtaggggtt 260

                                                                       
Query: 61  cattcttgaatattttctgatttaaaactgctcacctgaaattgatactttcagatcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcttgaatattttctgatttaaaactgctcacctgaaattgatactttcagatcctg 320

                                                                       
Query: 121 atctgtaaattactcaagatttgataagaggctgagttctctgtgttgttgcagaaatgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atctgtaaattactcaagatttgataagaggctgagttctctgtgttgctgcagaaatgg 380

                                                                       
Query: 181 agttgggacggtcataccgtggctacctgcgctcagagcattttctcccttgagcttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgggacggtcataccgtggctacctgcgctcagagcattttctcccttgagcttatt 440

                                                                       
Query: 241 ttgttaacgattcatatcttgtgttcagttactttgggagctatggagtgtgttctagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttaacgattcatatcttgtgttcagttactttgggagctatggagtgtgttctagga 500

                                                  
Query: 301 ggaaacttgatagcttttatgaaaagtaccatctaatat 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaacttgatagcttttatgaaaagtaccatctaatat 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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