BAC Information

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BAC

Clone NameMSMg01-182F11
Chromosome11 (Build37)
Map Location 105,159,539 - 105,159,960
singlet/doubletsinglet
Overlap geneMrc2
Upstream geneMapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
Downstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182F11.T7 (MSMg01no182_f11.b1)MSMg01-182F11.TJ (MSMg01no182_f11.g1)
ACCAG375249AG375250
length722737
length of high quality
(start - end)
485 (46 - 530)237 (120 - 356)
definitionCHROMAT_FILE: MSMg01no182_f11.b1 PHD_FILE: MSMg01no182_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:03 2005CHROMAT_FILE: MSMg01no182_f11.g1 PHD_FILE: MSMg01no182_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCTATTGCTAACCTATTAGAAGTGGAGTCTTGCTGAAGGAAGT
TGCACCTGGTCCTGGCCCTCTTCTCTCGGCTTTTCCAGCTGCCGAGAAGG
TAGTGGTTTTTAATCACATCCTCCGTATGACTTTTGACCTTGTGTCAGGT
TCAACGCAACTAGACTGTGCGACCACAGGTTGGTCCCCTGAAACTGCTGA
CCAAAGTAATTTTCCTTTCTTTGTGTCAGGTGTTTGTTACAGCAATGAAA
AAACCAACGCAACCATCCTGGATACAACTCTTTGACGAGCTTCCTGGGAA
ATCCAAGAGGCACGGCCCTTCGCTGTTCTAAGGTTCTGGCGGTTGTTTTC
ACTCCTAGGTATCCCGAACATACTAGAGTGTTAAAGGAGAGCTCAGGAGC
CGGTTAGGCCAAGGGAAGGAAGGACCTACTTGGTAGAAGGTACAGTGAGC
AGAGGTCTGGCAGTGGAGTGTGGAGCAGAGCATGCCGGTAAGGTGAATGA
GTACGAGTGCCTTCCTCTTTTTTGATTCTTGCTCGCTCTCCTTTCTACCT
TCTTTCTTTTTTTTAATTAGTAACAATATCTCTTCACACCGCTATTTTTC
ATGGCGTTGGTTTTTTTTTTCTCTCCTATCCCCTTCTTTTTTCCCACCCC
CCTTCTTTCCCCTTTTTTCTAN
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAACAGCCAGGACTACCCAGAGAAACTT
GTAGGCTTAGATTTTTCCAAACCTACTTTATTTAATTAGGGTTCTTTAAG
CTTTCAACCTCCCTTCTAGCCCACCCACCAGAGGTAGGGGAAAAGAAAGG
TTAGGAAGCAGGGTTTGTAGACCTGTTTAGAAGTAGTTCTTTGGGGAGAT
CGAAATCTTTGTTATCAAGATAGCGGCGGTCCAGTCTAATCAGCAAACAC
CAAACAGGAATCTTTTTTTGAGGCTCGATTCAGAAGAAACCACAAGTCTC
TGTCCAATAGCTGTCCNNNTCAGACCGACAAGAAGCAGCCTGAATATCAC
CGGAAGTTCTCCGCCAAGAAAAAAAAACAAAGTCCCAACAAGTGAAGATC
AGCGAGCGGTTCGGTGCAAGGCGAAGCAAGGCCAGAGCTTCCACACTCCG
TTTGCGGGGTCGTATTTATATTTCTTCTAATCATCGCCTGTCTGTTTCAT
CATACTATTTTTTGACCCAACTGAGTTCCCCTTTTATTCTCGCCTTGTAT
GTTTCTGAACATGGGTAGGCGACGCCACATTTCCCTTGTCGCTTTTTTTC
ATTCATTCTACCTTCAGTTTCATTTCTTCTTGTTCCCGTTTCACGCTTTC
GCACTATTTCACTCCCTTTTTTTACCACTCCCCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_f11.b1 MSMg01no182_f11.b1 CHROMAT_FILE:
MSMg01no182_f11.b1 PHD_FILE: MSMg01no182_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:03 2005
         (485 letters)



>mm_chr11_105159076_105159960
          Length = 885

 Score =  770 bits (398), Expect = 0.0
 Identities = 416/422 (98%)
 Strand = Plus / Minus

                                                                       
Query: 64  gtcctggccctcttctctcggcttttccagctgccgagaaggtagtggtttttaatcaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gtcctggccctcttctctcggcttttccagctgccgagaaggtagtggtttttaatcaca 826

                                                                       
Query: 124 tcctccgtatgacttttgaccttgtgtcaggttcaacgcaactagactgtgcgaccacag 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 825 tcctccgtatgacttttgaccttgcgtcaggttcaacgcaactagactgtgcgaccacag 766

                                                                       
Query: 184 gttggtcccctgaaactgctgaccaaagtaattttcctttctttgtgtcaggtgtttgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gttggtcccctgaaactgctgaccaaagtaattttcctttctttgtgtcaggtgtttgtt 706

                                                                       
Query: 244 acagcaatgaaaaaaccaacgcaaccatcctggatacaactctttgacgagcttcctggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acagcaatgaaaaaaccaacgcaaccatcctggatacaactctttgacgagcttcctggg 646

                                                                       
Query: 304 aaatccaagaggcacggcccttcgctgttctaaggttctggcggttgttttcactcctag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaatccaagaggcacggcccttcgctgttctaaggttctggcggttgttttcactcctag 586

                                                                       
Query: 364 gtatcccgaacatactagagtgttaaaggagagctcaggagccggttaggccaagggaag 423
           |||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 585 gtatcctgaagatactagagtcttaaaggaaagctcaggagccggttaggccaagggaag 526

                                                                       
Query: 424 gaaggacctacttggtagaaggtacagtgagcagaggtctggcagtggagtgtggagcag 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 525 gaaggacctacttggtagaaggtacagtgagcaaaggtctggcagtggagtgtggagcag 466

             
Query: 484 ag 485
           ||
Sbjct: 465 ag 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)