BAC Information

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BAC

Clone NameMSMg01-183H07
Chromosome11 (Build37)
Map Location 94,337,308 - 94,337,500
singlet/doubletsinglet
Overlap genenone
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g
Downstream geneSpata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183H07.T7 (MSMg01no183_h07.b1)MSMg01-183H07.TJ (MSMg01no183_h07.g1)
ACCAG376039AG376040
length768731
length of high quality
(start - end)
194 (129 - 322)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no183_h07.b1 PHD_FILE: MSMg01no183_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:28 2005CHROMAT_FILE: MSMg01no183_h07.g1 PHD_FILE: MSMg01no183_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCCCACCTCTTGCTGCCAAAACCTAAGGCTTCAAGATACGGTGGTCA
ATAGGGCAAGCCCACCTTTTAGACCGAGGATAACCAGGAGGGAGAAAAGA
TGTCAGGCTCTAAAAGCAAGCCATAAATAGTTCCTCTATCCCAGAAGAGG
GCTCCGAGTTCAAGATTGGCGCCTCACACGCAGAATGAGAGCAGAGACTC
CCTCCAGGAGAAACAGGCACTTAGGGGATGTGCTCATTAGCATGAAATGC
AAATAGGCCTGGCCTCATTTGTTTTATTCTATGCTGGGATTTGGCAAAAG
GGCAACCAGGAAGGTGTATTTCGCCGCAGCACGCTCTGCCCTCTTCACCC
CATCTTGGCAACTGGTCGCACCGCTAGATGAAACGAACACAAACCCATGT
CATGGTGCCAGGAGGCCTCTGGAGGATGTGCGGGTGGCCTCATTTTGTCA
GGCAAGAACGGCTGCGAACCAGGACTTGTCTGTAGGTGATTCATGCCATT
ACTTTCCTTTTTCTTCCCGTAGCGGCTTGGTGCCAACACCCGAGGCGCCT
TTCGAATAATGTTCCCATGTACGCTTCCTTTTGTGCTAGATATATCCCCT
AGATTTTTTATATATGGTACGCCTCCGGCTTTTCTCGCTTTATTCTTTTT
TTATGCTCTCTTATTTTTTTGTTTTATCTATGTTTCCACATCTCCTTAAT
GCGTTTCCATTTTTTTCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCAGCACCCACAATAAAAATTCAG
GCATGGTAGTGCACACTTTACCCCAGTCCCGGGGAGGCTGGCACAGGTAG
ATCCTTGAAGCTCACTGGGCACTCAGCCTAGCTGGATAGATGGAACTCTG
TCCCAGAAAATAAAGTGGGATATGATTGAGGAAGACACCTGACATTGACC
TCTGGCCTCCACAAATACACACACACTTATGCATGCACACAGATATGAAT
GTGCATACACATCCCCCCTCCACACATATCCCACACATAAATAAATAAAG
TAAGGCACATTTTTTATCGAAAACACCCCCAGGGCTGCCAGTTTTTGAAC
ACACATTTCATCCTCACATTATTCCTATGAAGTAGATGTTAAGAGTCTAT
TTTTCAAACTAGCTAAGTGAATTTTAAGGACTGACTACAGTCCCTGATCC
AATCCAGGGACAACCTAGCCTACAAAAGTGCCTGGCCCATACCAGAGGCT
TCCCCAACACTCCCTGGTCCCACCACCACCACATTCCCTGCCCCACTGGC
TCCAGCATCCCGCCCATCCACGCTGACACCTGCACAAAGCCATAGAGCAC
AGTCAGGGGCAAGACAACCACCATGATTAGCGGCGTGCTGGTCACGATGA
CCATGATGGCGGAGATGGATGCGAAGAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_h07.b1 MSMg01no183_h07.b1 CHROMAT_FILE:
MSMg01no183_h07.b1 PHD_FILE: MSMg01no183_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:28 2005
         (194 letters)



>mm_chr11_94337108_94337701
          Length = 594

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataaccaggagggagaaaagatgtcaggctctaaaagcaagccataaatagttcctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gataaccaggagggagaaaagatgtcaggctctaaaagcaagccataaatagttcctcta 334

                                                                       
Query: 61  tcccagaagagggctccgagttcaagattggcgcctcacacgcagaatgagagcagagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcccagaagagggctccgagttcaagattggcgcctcacacgcagaatgagagcagagac 274

                                                                       
Query: 121 tccctccaggagaaacaggcacttaggggatgtgctcattagcatgaaatgcaaataggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccctccaggagaaacaggcacttaggggatgtgctcattagcatgaaatgcaaataggc 214

                        
Query: 181 ctggcctcatttg 193
           |||||||||||||
Sbjct: 213 ctggcctcatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)