XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGATCGGCGGAATTCT
CTTTTCCTTTCCTACAGAGGTCTCTTTCAACTGGATTCACTTACATGTGC
ACCTGCTCTAGCTTACCCCTTAATGACGTTATCAATATTCACGTCAAAAG
AAAAGACCCCGGTAATGAACCGCTGTGGTCATTAAAGGCTGCTAGCGCTT
TCTTTGGCCACTGAGTAGGTAAGTAAATTTGAATAAAATTTTGTAGATTT
CTAACATACCAAAGGGATTTGAAAACTCCAGATATGTACCAGTAAATAAA
TAGTTACTTTGAACTGCCTTTATATCTTTCCTTTTCCAGCTACTTTTATA
GTGACTTATTCTAACCCCGCACTCCCAAAACAAACAAACAAACAAATCCT
AAAATATTTACTAACTGATCCTTTATTAAAAACAAACAAACAAACAAATG
GCAGAATTGAGGGGAACTTTGGTTCCTGGCGATAGTTTAAAAATATTGAA
AACAAAGAAAGTTTGTGTTAGATAGCCTTCTCTTAGCCAGGAATGTAATA
CTTCCTCTCATCTCGAGCATTTATGACCATGGTGATCGCCATGGCTGCTG
AAAAGCCTTGAGGCATCTTTTGAGTCAACAAAATTAAATCTCACTCACAG
CGTGTTTGTTGCTCAGATTCATATTCATAAACCCTCAGCTCTCATTTTTA
AACCATGTAGTCTTCTGGTCTCCGA

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGCCATGGCAGATGTATCCTAGAAC
TGTGAGCCAAAATGTTCGCATCCCTTTAAATTTCTCTTTGTCAGGGATTC
TGTTGCAACAACCAACCAACCAACCAACCAAACAAACAAACAAACAAAAA
AAAACAAACCAAAAAACCATCTATAACTTAGAGCCCTGTTATGATTTAGA
TATAAAATGTCTCCAAAAGAGCACTTAGTCCTGATATGAGTTCTTGTTAT
ATGTTCTTTGTTCATCTCTAGAACAAAATATCTTGCATAAGAATCTTAAG
GGAAGGATAATTTATTTTATTTCACACCCCCTCGCCTAGAGAGTCATGGT
ATGGGATTTATTTGATATGGTGGGAAACATGAAAGAAAACAGAGAGGCTT
GGACATGTCCCTAGAACCCTATTTCTCCTACCTAGATCTCATATATCAAA
TCATTCTACAGTCTCCCCAAGTAGTACCACTTGTTGGTAACTAAGTATTC
AGATATATGAACCTGTGAACAACATTTAACATCCTGTATCATGAGGTCTC
TAGCCCAGTGAGTAGATTAACTTACTAACAGGTTACGATTTGAAGGCATT
ATTAGGAGGTTGTCTTAAATAGAACTTTATTGCTGGGAAGAGATACCATG
TCCAAATTAAATCTTTTTTCTTTTT

Query= MSMg01no183_k22.b1 MSMg01no183_k22.b1 CHROMAT_FILE:
MSMg01no183_k22.b1 PHD_FILE: MSMg01no183_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:46 2005
         (251 letters)



>mm_chr11_17933002_17933652
          Length = 651

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaaaacaaacaaacaaacaaatcctaaaatatttactaactgatcctttattaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cccaaaacaaacaaacaaacaaatcctaaaatatttactaactgatcctttattaaaaac 392

                                                                       
Query: 61  aaacaaacaaacaaatggcagaattgaggggaactttggttcctggcgatagtttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaacaaacaaacaaatggcagaattgaggggaactttggttcctggcgatagtttaaaaa 332

                                                                       
Query: 121 tattgaaaacaaagaaagtttgtgttagatagccttctcttagccaggaatgtaatactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tattgaaaacaaagaaagtttgtgttagatagccttctcttagccaggaatgtaatactt 272

                                                                       
Query: 181 cctctcatctcgagcatttatgaccatggtgatcgccatggctgctgaaaagccttgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctctcatctcgagcatttatgaccatggtgatcgccatggctgctgaaaagccttgagg 212

                      
Query: 241 catcttttgag 251
           |||||||||||
Sbjct: 211 catcttttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no183_k22.g1 MSMg01no183_k22.g1 CHROMAT_FILE:
MSMg01no183_k22.g1 PHD_FILE: MSMg01no183_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:46 2005
         (299 letters)



>mm_chr11_17857066_17857764
          Length = 699

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagccatggcagatgtatcctagaactgtgagccaaaatgttcgcatccctttaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagccatggcagatgtatcctagaactgtgagccaaaatgttcgcatccctttaaattt 260

                                                                       
Query: 61  ctctttgtcagggattctgttgcaacaaccaaccaaccaaccaaccaaacaaacaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctttgtcagggattctgttgcaacaaccaaccaaccaaccaaccaaacaaacaaacaa 320

                                                                       
Query: 121 acaaaaaaaaacaaaccaaaaaaccatctataacttagagccctgttatgatttagatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaaaaaaacaaaccaaaaaaccatctataacttagagccctgttatgatttagatat 380

                                                                       
Query: 181 aaaatgtctccaaaagagcacttagtcctgatatgagttcttgttatatgttctttgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgtctccaaaagagcacttagtcctgatatgagttcttgttatatgttctttgttc 440

                                                                   
Query: 241 atctctagaacaaaatatcttgcataagaatcttaagggaaggataatttatttta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctctagaacaaaatatcttgcataagaatcttaagggaaggataatttatttta 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)