Query= MSMg01no183_l17.b1 MSMg01no183_l17.b1 CHROMAT_FILE:
MSMg01no183_l17.b1 PHD_FILE: MSMg01no183_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:50 2005
(329 letters)
>mm_chr11_92356906_92357633
Length = 728
Score = 540 bits (279), Expect = e-158
Identities = 312/325 (96%), Gaps = 6/325 (1%)
Strand = Plus / Plus
Query: 4 ggaattcacatt-tcactatctatctatcttttacttatctaattatcttttatctatca 62
|||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 207 ggaattcacattatcactatctatctatcttttacctatctaactatcttttatctatca 266
Query: 63 tctatcatcatctatctactatctatatcaatttttatctatctactatctatgtaactt 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 267 tctatcatcatctatctactatctatatcaatttttatctatctactatctatgtatctt 326
Query: 123 ttaatcatttatctatcaatctatctatctatgcatatttaactatctgactatctatta 182
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 327 ttaatcatttatctatcaatctatctatctatccatatttaactatctaactatctatta 386
Query: 183 tttgtcatctttctctcccacatggacagaaacaataaacaaacttaataaaattaacat 242
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttgtcatctttc----ccacatggacagaaacaataaacaaacttaataaaattaacat 442
Query: 243 agaatagtagacaatatttttttcttaactgatttagatttatctcattaatagtttcat 302
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 443 agaatagtagacaatatttttc-cttaactgatttagatttatctcattaatattttcat 501
Query: 303 agttattactttacaagtatttgag 327
|||||||||||||||||||||||||
Sbjct: 502 agttattactttacaagtatttgag 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 728
Length adjustment: 9
Effective length of query: 320
Effective length of database: 719
Effective search space: 230080
Effective search space used: 230080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_l17.g1 MSMg01no183_l17.g1 CHROMAT_FILE:
MSMg01no183_l17.g1 PHD_FILE: MSMg01no183_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:50 2005
(585 letters)
>mm_chr11_92480390_92481374
Length = 985
Score = 1031 bits (533), Expect = 0.0
Identities = 572/585 (97%)
Strand = Plus / Minus
Query: 1 tggtttacaaattatgagtgaataaaactccactctttaagcaattacttcttgacaact 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 785 tggtttacaaattatgagtgaataaaactccactctttaagcaattagttcttgacaact 726
Query: 61 gtatgcatatccttgtaaaccaatgcttgtaatctttgacaaacttttctggagccagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtatgcatatccttgtaaaccaatgcttgtaatctttgacaaacttttctggagccagga 666
Query: 121 gaggaaagaatttactgtgttcagtaacaagataagtttggcgaccacaatgctatgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaggaaagaatttactgtgttcagtaacaagataagtttggcgaccacaatgctatgctc 606
Query: 181 gtctgttcatactgtatgaatttttaggactttcaaggataggggacaccttggaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gtctgttcatactgtatgaatttttaggactttcaaggataggggacaccttggaaaaga 546
Query: 241 ctctctttcttggaaagtagccaatcgtaaatattcaaactctttgtttgaatcctgcta 300
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 545 ctctctttcttggaaagtagccaatcgtttatattcaaactctttgtttgaatcctgtta 486
Query: 301 gtttacacaaagaaaatgggagcaagccagttaaagaaagagggattgaaggaaatcttt 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtttacacaaagaaaattggagcaagccagttaaagaaagagggattgaaggaaatcttt 426
Query: 361 tttgactacatccactaatgatgtcagtgaactttcatattagaagacacaggaaacttt 420
|||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 425 tttgactacacccgctaatgatgtcagtgaactttcacattagaagacacagggaacttt 366
Query: 421 attatagtttgtctctagtctctattgctttaattcataactaatcagagattgtttatc 480
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 365 attatagtttgtctctagtctctattgctttaattcataactagtcggagattgtctatc 306
Query: 481 aaggtaagaacaagtcatagtctccatagcaatctcttgtttcagagaagtcatcaggca 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 aaggtaagaacaagtcatagtctccatagcaatctctcgtttcagagaagtcatcaggca 246
Query: 541 aaaactgaagataagtaatagatttagatttttgtttgtttgttt 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaaactgaagataagtaatagatttagatttttgtttgtttgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
