BAC Information

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BAC

Clone NameMSMg01-183P17
Chromosome11 (Build37)
Map Location 38,669,956 - 38,670,246
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183P17.T7 (MSMg01no183_p17.b1)MSMg01-183P17.TJ (MSMg01no183_p17.g1)
ACCAG376407AG376408
length727748
length of high quality
(start - end)
292 (436 - 727)294 (373 - 666)
definitionCHROMAT_FILE: MSMg01no183_p17.b1 PHD_FILE: MSMg01no183_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:08 2005CHROMAT_FILE: MSMg01no183_p17.g1 PHD_FILE: MSMg01no183_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAACTGGTACCGGAAGATTACCAGTAGATGATATGATAATGTCA
TTCAAGCACATAAATGACAGTTAACCCAAATTGCTTTTCAGCTTTTCTGA
GAATTCAAAGTTAATTTTTAGTGTTAGAAACCTGTAGCATCCAATAAAAA
AAATTAAACTGTTTTGATATTATGATTGAAGTCTTTCAAAATGACAAGTT
AACATTAATATGTCACCTGCAAATCCAATAGCTAACATAATTTAAAAGAT
GATTGAGAATCAACCCCCATATGTTTTTGTGAACTTAGTCTGGACAAAAT
AGTTCAGATCCATAGTATTCTACCACGCCCTACTTAAGTAGATGTTAATT
AACTTTGATGTAGACCCTGAATAAATTATAAAGAATACTTTGAGATAGGA
GACCATTTTAACATTTAATTTTATTTTAAAATCCCAGAAAATAACCTAAT
GAGACTCAGCCCCTTTTTATTCCCTTTACTTTTCCTTTGCTATCTACTAC
TGAAATTCAGTGAAAATCTTATCTGTCCATATCAAAAAGCACTATACAGC
CATAATCAAAAACATGAAGTCATAAAGTTAAAACCGTTTAATCCTATTAN
AGCCTCATTAAATCAAGGCGGTATTTATAGGATGGGACTTGATTCCCTTG
TACACTAGCAAATCTGCAACCCGAGTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATG
GGGTTATTTGAATTTCTGCAGTGGCCTGTTTGTCTTATTGACAGTATCTT
TAGCTCTACAGAAGCTTTGTAATTTTATGAGGTCCTATTTGTTGATTCTT
GATTATGCAGCCTAAGCCATTGCTATTCTGTTTAGGAATTTTTGCCCTGT
ACCCATATCTTCAAAGGTTTTCCCCACTTTCTCCTCTATAAATTTCAGTG
ACTCTGGTTTTATGTGGAGTTCTTTGATCCACTTAGACTTGAGCTTTGTA
CAAGGATATATTAATGCACCCCACCCAGGGATTCATCCCATAATCAGCCA
CCAAACCCAGACACTATTTCATATGCCAAAAAGATTTTGCTGAAGAGACC
GTGTTATAGCTCTCTCATATGAGGCTATGCCAGTGCCTCATAAATACAGA
AATGGATGCTCACAGTCATAAGATGGAACACAGAGCCCCAATGGAGAAGC
TAGAGAAAGCACCCAAGGAGATGAAGGGTTCTGCAACCCTATAGGTGGAA
AAACAATATGAACTAACCAGTATCCCCAGAACTCATATCTCTAGTTACAT
ATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTT
GTTACTGCCACCTTTATATGCCCCAGTACAGTGGAATGCTAGGGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_p17.b1 MSMg01no183_p17.b1 CHROMAT_FILE:
MSMg01no183_p17.b1 PHD_FILE: MSMg01no183_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:08 2005
         (292 letters)



>mm_chr11_38669756_38670447
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactttgagataggagaccattttaacatttaattttattttaaaatcccagaaaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactttgagataggagaccattttaacatttaattttattttaaaatcccagaaaataac 260

                                                                       
Query: 61  ctaatgagactcagcccctttttattccctttacttttcctttgctatctactactgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatgagactcagcccctttttattccctttacttttcctttgctatctactactgaaa 320

                                                                       
Query: 121 ttcagtgaaaatcttatctgtccatatcaaaaagcactatacagccataatcaaaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagtgaaaatcttatctgtccatatcaaaaagcactatacagccataatcaaaaacat 380

                                                                       
Query: 181 gaagtcataaagttaaaaccgtttaatcctattanagcctcattaaatcaaggcggtatt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gaagtcataaagttaaaaccgtttaatcctattaaagcctcattaaatcaaggcggtatt 440

                                                              
Query: 241 tataggatgggacttgattcccttgtacactagcaaatctgcaacccgagt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataggatgggacttgattcccttgtacactagcaaatctgcaacccgagt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)