BAC Information

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BAC

Clone NameMSMg01-184J16
Chromosome11 (Build37)
Map Location 12,254,163 - 12,329,219
singlet/doubletdoublet
Overlap geneCobl
Upstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184J16.T7 (MSMg01no184_j16.b1)MSMg01-184J16.TJ (MSMg01no184_j16.g1)
ACCAG376840AG376841
length745769
length of high quality
(start - end)
315 (57 - 371)218 (80 - 297)
definitionCHROMAT_FILE: MSMg01no184_j16.b1 PHD_FILE: MSMg01no184_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:02 2005CHROMAT_FILE: MSMg01no184_j16.g1 PHD_FILE: MSMg01no184_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,254,163 - 12,254,472)(12,329,002 - 12,329,219)
sequence
NAAAAAAAGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTGATCTTCCTCACCACACAGTGGAGGTCAAGT
ATGGAGTTGTGATAGATCATACATTCAGCCTATCTCTGGATGCGTGTTTC
CAATAGTAGTCATTGGCAACACCCTTCTCACACATATTTACGTCCCAGGT
GCATGCTCACACATGTACCCATACATGTACAACATGGCCAAAGTTAAACA
TGTAAGGGAGGGCTTCCAAATCACAAAAGAATATGGCTGAAAAACTGGAA
TTTTCACTTCTTAGCCATTTGTCTCCATTCCCTTTAAACTGTTCTACACT
TGGGCTGGAAGTCCAGATGTTCTCTTAACCGCCACCTCACAGTGGGAATT
TAAGAGAAGACCTTCCTCCTCTCCCCTGGGAGTAACCCACTCCTTACAAG
GGGGTGGACCCCTAGCTTGGAGAATGGGCTTCCATCTCAGCACCATAGCC
TCAAGCCCACAGCATCAGCACAGCTGGCAGCAGCGAGACTGAGTCAGAGG
CCATGGAGAGGAAGGCTCAGGGAGGCATGTCTGTGTGGATGCTCACTGCG
GGGTGGCTGGGTGTTCTTCCTTAGTTTTACACTGTTTATCATTTCCTTCA
GGTGTTTCTCTGTCCCCTCTCCCTTATCTTTTACCCTATCAATATTAACT
GTTCTTATACCATGAATCAAGCCCAGACATTAGAAAATAAACCAN
TAGACGATATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACCACTGAAGTGACTGA
GTATTTTAGGAATTGTTTTTGATTATCAGACAATTTAGGCACGTTAACTG
TTTCCAAGGAGGTAAAATTAGTTTGTCTCTCTGGCAAAGCTTGCCATTCT
GATTTAGAATCTCAATCTTTAAATGCCTGCTAGACCCAGCCACTCTAAAT
ATGCAGCAGATGAGCTGCCCAGCCCTTCTGATAGGAGGAGCTGAGCGTAC
AAGAACAGTCTTTTGCCTTTAAGTGGAGGCCTGCAGAATAAGATCGAGTG
TGATCCTGTTTTCTTTTTTTTTATCCCCCCCCCCCGCCCCTTTCTTTTGA
TGTTACTTTTTTATCACTTTTTACTCCCATCGAAAAAAGAAAAAAAAATT
GTGAATATGGGGGATTTCCTGTATAACTATTTCTATGCCCCCTTCTGACT
GTAAAAAATTACTTGTAACACCAGAAGGTATTTTACACTTAAACAATTAC
TCATAATATCCTATACACCGCTTTTTTTTAAACTAAACTAAATAAAACCA
TCGACTATTAATACCAAATACCCATTCTCACCCTTAATATCCCTCTATAA
TAACCCCACAACCATACCATTTTTCAAATACCCATATGACATCATTCACT
CGTCTCACCATCACTCTAATTTATGTACTCACTTAAATATTACTAAAACT
CACAATCATACTTATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_j16.b1 MSMg01no184_j16.b1 CHROMAT_FILE:
MSMg01no184_j16.b1 PHD_FILE: MSMg01no184_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:02 2005
         (315 letters)



>mm_chr11_12253959_12254673
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgatcttcctcaccacacagtggaggtcaagtatggagttgtgatagatcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgatcttcctcaccacacagtggaggtcaagtatggagttgtgatagatcat 264

                                                                       
Query: 65  acattcagcctatctctggatgcgtgtttccaatagtagtcattggcaacacccttctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acattcagcctatctctggatgcgtgtttccaatagtagtcattggcaacacccttctca 324

                                                                       
Query: 125 cacatatttacgtcccaggtgcatgctcacacatgtacccatacatgtacaacatggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacatatttacgtcccaggtgcatgctcacacatgtacccatacatgtacaacatggcca 384

                                                                       
Query: 185 aagttaaacatgtaagggagggcttccaaatcacaaaagaatatggctgaaaaactggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagttaaacatgtaagggagggcttccaaatcacaaaagaatatggctgaaaaactggaa 444

                                                                       
Query: 245 -ttttcacttcttagccatttgtctccattccctttaaactgttctacacttgggctgga 303
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttt-acttcttagccatttgtctccattccctttaaactgttctacacttgggctgga 503

                      
Query: 304 agtccagatgt 314
           |||||||||||
Sbjct: 504 agtccagatgt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_j16.g1 MSMg01no184_j16.g1 CHROMAT_FILE:
MSMg01no184_j16.g1 PHD_FILE: MSMg01no184_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:02 2005
         (218 letters)



>mm_chr11_12328802_12329419
          Length = 618

 Score =  406 bits (210), Expect = e-118
 Identities = 216/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaccactgaagtgactgagtattttaggaattgtttttgattatcagacaatttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caagaccactgaagtgactgagtattttaggaattgtttttgattatcagacaatttagg 359

                                                                       
Query: 61  cacgttaactgtttccaaggaggtaaaattagtttgtctctctggcaaagcttgccattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cacgttaactgtttccaaggaggtaaaattagtttgtctctctggcaaagcttgccattc 299

                                                                       
Query: 121 tgatttagaatctcaatctttaaatgcctgctagacccagccactctaaatatgcagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 298 tgatttagaatctcaatctttaaatgcctgctagacccagccactataaatatgcagcag 239

                                                 
Query: 181 atgagctgcccagcccttctgataggaggagctgagcg 218
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 238 atgagctgcccagcccctctgataggaggagctgagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)