BAC Information

Click to search

BAC

Clone NameMSMg01-185D19
Chromosome11 (Build37)
Map Location 115,152,299 - 115,271,374
singlet/doubletdoublet
Overlap geneFads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr
Downstream geneAtp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185D19.T7 (MSMg01no185_d19.b1)MSMg01-185D19.TJ (MSMg01no185_d19.g1)
ACCAG377289AG377290
length758764
length of high quality
(start - end)		319 (59 - 377)288 (90 - 377)
definitionCHROMAT_FILE: MSMg01no185_d19.b1 PHD_FILE: MSMg01no185_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:53 2005CHROMAT_FILE: MSMg01no185_d19.g1 PHD_FILE: MSMg01no185_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,152,299 - 115,152,611)(115,271,088 - 115,271,374)
sequence
TCTCTTTTCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTGAAATCCAATCTCCAATCCTTATGCTTGCA
AGGCAAACACTCATCCCCACAGCTGGCTCATGTCACCTGTGAGACAGTGC
ACCGTGAGAGTCTACACATGTGATAAAAAGGCACAGAGCCAAGCACACAC
AGGCGCCAACATCAGCTTCCTTGGTCTCGCTCCCGGATGACACATAAATA
TAATTACTAGGATTAAGCAAGAATGACTGATCCAATCCACTAGACTTCTC
TGTCCTACACTGAGATGTCCTGTGAGTCTCTAACTATAATATGGCAGTGT
ATTTTGTACTGAATATCTGCCCTGTTCTTCTAAACCCCCCTCCAAAGGAG
AGACAGGCAGACAGACAGACAGAATAGTTAACGGCCAGAATACAGCTCAA
AGATGGTGCAGGTCTTTGCACAAGGCCCTTTATCTAATCCCTCTCACCAA
AAAAGAAAAAAAAATCATTATGGCTGACCTTATTCAAACAAGAGTCCTGG
ATGGGAGCCAGCAGGAAGATGGTTAGACGTGCCCGAGGGTACAGCCTTGA
TGCAACTGCACCAAACTACAGCCAGTAGAGAGAAAACGGATCATGACTAG
GCTGGGGGTTCTTTGCGGTTTGTACCACAGGGAGCCAGTGGATGGCAACA
GGCATTCCCCTGTGTGACACACCTCCCAAAAGGGCTCAGCGAGATTCCTA
GTGGGCTC

CCTCTTNTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCGGACGG
GGAGGGAGGAACAGCAGTTCTGAGACTCTCAGAAGCCCCGGAGTCCAGGC
CTCAGGGATAGCCAACCACCTAAGCAGGCACATTCTATTCTAGCCTATGT
CAAAACTGGCCATGGAAAGGCCCGCAAAGCTAATGGAGTTCTTCAGTATA
AAGATTCTAGTTTGCAAATACTTCTAGTATGCTAATTTCCCAGGCTCCTT
CTGACAGTTTCACTGGACTCTGAAAACAGCAGGGGGATGGGTTTCTCACG
AGCAAAAGGAACCTGTTCTCCATGGATTGATCATTCTCCCCTNCCCCGCT
GTGAATTCTCTTTGTTTACCCTCAAAAGCCGACCCCTCACAAAGAAAAAC
AAAGCTGAGAGGCGGACAATCGGGCACATTCAGAAGACTAGAAAGGATTA
TTATAAGCTGGAGGTGTGTGGACTGAGCAGAAAAACCCCTTTATTCCACA
GGAATGTGGACGCAGAGCAGTCGCTGAGTTCCTTATAGCAGACAAGATGC
CAGCCAGTACCTTTGTTCACATTCTGCCCACCAGGACCGCTGCTCCGACA
GTATGATATGCTTAACCGATCTGGGAAATGAAAGAATACATGCTCGAGGA
TCCCCCCCTAGCCGAATGTGTAGACTACTTATTCAGTGTGACTTATTACC
CCCCCCTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_d19.b1 MSMg01no185_d19.b1 CHROMAT_FILE:
MSMg01no185_d19.b1 PHD_FILE: MSMg01no185_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:53 2005
         (319 letters)



>mm_chr11_115152096_115152814
          Length = 719

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgaaatccaatctccaatccttatgcttgcaaggcaaacactcatccccaca 63
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaactcttgaaatccaatctccaatccttatgcttgcaaggcaaacactcatccccaca 263

                                                                       
Query: 64  gctggctcatgtcacctgtgagacagtgcaccgtgagagtctacacatgtgataaaaagg 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctggctcatgtcacttgtgagacagtgcaccgtgagagtctacacatgtgataaaaagg 323

                                                                       
Query: 124 cacagagccaagcacacacaggcgccaacatcagcttccttggtctcgctcccggatgac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacagagccaagcacacacaggcgccaacatcagcttccttggtctcgctcccggatgac 383

                                                                       
Query: 184 acataaatataattactaggattaagcaagaatgactgatccaatccactagacttctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acataaatataattactaggattaagcaagaatgactgatccaatccactagacttctct 443

                                                                       
Query: 244 gtcctacactgagatgtcctgtgagtctctaactataatatggcagtgtattttgtactg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcctacactgagatgtcctgtgagtctctaactataatatggcagtgtattttgtactg 503

                        
Query: 304 aatatctgccctg 316
           |||||||||||||
Sbjct: 504 aatatctgccctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_d19.g1 MSMg01no185_d19.g1 CHROMAT_FILE:
MSMg01no185_d19.g1 PHD_FILE: MSMg01no185_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:53 2005
         (288 letters)



>mm_chr11_115270888_115271575
          Length = 688

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcggacggggagggaggaacagcagttctgagactctcagaagccccggagtccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actgcggacggggagggaggaacagcagttctgagactctcagaagccccggagtccagg 428

                                                                       
Query: 61  cctcagggatagccaaccacctaagcaggcacattctattctagcctatgtcaaaactgg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 427 cctcagggatagccaaccacctaagcagacacattctattctagcctatgtcaaaactgg 368

                                                                       
Query: 121 ccatggaaaggcccgcaaagctaatggagttcttcagtataaagattctagtttgcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccatggaaaggcccgcaaagctaatggagttcttcagtataaagattctagtttgcaaat 308

                                                                       
Query: 181 acttctagtatgctaatttcccaggctccttctgacagtttcactggactctgaaaacag 240
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 acttctagtatgcaaatttcccaggctccttatgacagtttcactggactctgaaaacag 248

                                                          
Query: 241 cagggggatgggtttctcacgagcaaaaggaacctgttctccatgga 287
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caggggggtgggtttctcacgagcaaaaggaacctgttctccatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |