Query= MSMg01no185_f06.b1 MSMg01no185_f06.b1 CHROMAT_FILE:
MSMg01no185_f06.b1 PHD_FILE: MSMg01no185_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:59 2005
(313 letters)
>mm_chr11_42073071_42073783
Length = 713
Score = 518 bits (268), Expect = e-151
Identities = 298/308 (96%), Gaps = 2/308 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagctctttatgcagttcatatataacattatgggagatactcatagtgatgt 64
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 205 gaattcacagctctttatgcagttcatatataacattaagggagacactcatagtgatgt 264
Query: 65 gtgctgaaacagatgtcagtgaatctagcatcaattcactgacatgcactccagtcaggc 124
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 265 gtgctgaaacagatgtcagcgaatccagcatcaattcactgacatgcattccagtcgggc 324
Query: 125 caaggtctaacaccgtgctcttctctcccgtatggctcatgttgaattcaaatctaggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaggtctaacaccgtgctcttctctcccgtatggctcatgttgaattcaaatctaggtt 384
Query: 185 ttcaaagtcagaggctaagaaagaggccaaattgaatcagtcatcttggaaagaagtttg 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 385 ttcaaagtcagaggctaagaaagaagccaaattgaatcagtcatcttggaaaggagtttg 444
Query: 245 agcaggaacagctgagtcaaactaaccagccagagttcagaaaatgctaaaaaggataa- 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcaggaacagctgagtcaaactaaccagccagagttcagaaaatgctaaaaaggataag 504
Query: 304 tttcactc 311
||| ||||
Sbjct: 505 ttt-actc 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_f06.g1 MSMg01no185_f06.g1 CHROMAT_FILE:
MSMg01no185_f06.g1 PHD_FILE: MSMg01no185_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:59 2005
(556 letters)
>mm_chr11_42216500_42217456
Length = 957
Score = 1000 bits (517), Expect = 0.0
Identities = 547/557 (98%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 1 agtacccttttctctgtccttcaccccagtccatctatagagatcaccccatcacctcag 60
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 757 agtacccttttctctgtccttcaccctagtccatctacagagatcaccccatcacctcag 698
Query: 61 tgcttttgcctctgagttttatcctatttctctgcctgggatagatccttccaagtactc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 697 tgcttttgcctctgagttttatcctatttctctgcctgggatagatccctccaagtactc 638
Query: 121 ccatggccagctacacagtgtcagcttatctgatgcatgatctgctcagactggcctatc 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccatggccagctacacagtatcagcttatctgatgcatgatctgctcagactggcctatc 578
Query: 181 ctggaccagtaccatttagtctcacccttatattatagccatgcaatgtctgatcatctg 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 577 ctggaccagtaccatttagtctcacccttatattatagccatccaatgtctgatcatctg 518
Query: 241 gactgtattttcccattactcattctttgtcttcttgcattggaatgtaaattttaatat 300
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 517 gactgtattttcccattactcattctttgtctttttgcattggaacgtaaattttaatat 458
Query: 301 accctgcatttcttccccaaagaacattcaggacatcagacatacactatgtctgaaat- 359
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atcctgcatctcttccccaaagaacattcaggacatcagacatacactatgtctgaaata 398
Query: 360 aaaaaattcatattgtaggagcaactgggtttcaatgctctcaactagttgtttttcctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaaaattcatattgtaggagcaactgggtttcaatgctctcaactagttgtttttcctg 338
Query: 420 gttgcagtttcttcttatcagcattatgggttgtgcagttgtgagaattattttgacaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gttgcagtttcttcttatcagcattatgggttgtgcagttgtgagaattattttgacaaa 278
Query: 480 cactttacatacatctcacatttaaatttttacaactctgtaaggtaattgctattgtgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cactttacatacatctcacatttaaatttttacaactctgtaaggtaattgctattgtgc 218
Query: 540 acagggaaagttctaga 556
|||||||||||||||||
Sbjct: 217 acagggaaagttctaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
