BAC Information

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BAC

Clone NameMSMg01-185G08
Chromosome11 (Build37)
Map Location 52,808,030 - 52,832,818
singlet/doubletdoublet
Overlap geneFstl4
Upstream geneUbe2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G08.T7 (MSMg01no185_g08.b1)MSMg01-185G08.TJ (MSMg01no185_g08.g1)
ACCAG377401AG377402
length774745
length of high quality
(start - end)		264 (46 - 309)295 (94 - 388)
definitionCHROMAT_FILE: MSMg01no185_g08.b1 PHD_FILE: MSMg01no185_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:05 2005CHROMAT_FILE: MSMg01no185_g08.g1 PHD_FILE: MSMg01no185_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,808,030 - 52,808,284)(52,832,524 - 52,832,818)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGTAATCCAATGCCCTCTAGCCTTTACTGGCATCTGCATGTAC
ATGGNGCGTATAACTTATCCCAGTGTTCATGCACTCGCATAAATAAAAAT
ATTTAAGAACTTCTTTTAAAACAAAATATTAAAAGGAATGACACCTATAA
CCCCTGAGATTGACCTCTGGCTTCCACTTATGATTTTGCATACTCGNGCA
TACACGTGCATGTGCACATATGTACACACACACACACACACACACNCNCA
CACAACCAATGCATAATTTTTCGAACATTCACCCANCCGCCCATAGGGAA
CATGTTTTCTTTATGCCCCCCCCCCCCCGNANAATCTGTATTTCGCTGTG
TTGTTTTTTTTCCCCCCCTTTAAAAAAAAANNNAAAAAAAATTCGGATCT
CGGNNNCTTNNNNTTNNNTTCTTTTATATTTTTCGGNNNNNNNNNNNNNN
NNNNNTATNTTATTAAATAAATAAAATAAAAACACTCGGCNCNNAACCCC
CCCCTNCCCCCCCCCCCANCANTCACACACAGGAAAAAAAATAAGAATAT
ATNGACCAAAANNCTNTTTNTNAATGATATAGATTTACCTGCNCCCCAAC
CNCCNCCCGCGGNCNCCCNCCNNNNNNNNCCCACCCCCCATACATATATT
TATATAATATTTGCGGTTGNNNNNNCCANCNACNACNNCCCCACNAACCA
ATTATAAATTTTTTTTTTTTTCCG

NTTTCTTTTNNNNCCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTG
CTTTCTGGATATCCAGGATACCTGGTAGGCACAAAGGTCAAGGCGGGAGT
AATAGCCAAGCGGTACCCAAGCTATGCGTAAGGAGATTGCATTCTCCTGA
GGCCCCAAAGAGAATGAGTTCCAGCCTGAAACCCATTAGCTCCGAGTCTG
TTTTCAGAATTTACAGCCTCCCTAGAGAATTTCCTTGGCCCTGGGGGGAG
CGAGGCAGGGCGGAGGGCTCGCCCTATTACTTTAACGCATTCACATGTGG
GAGCAAGGTCAGATGGGGATGTATGCTTCCATTCCTACATGTGCTCTCTC
TCCCATGAGACCTTAAGAAAGGTGTAAGCCAGCGCTCACACCCACCCCTG
GTGCAGTGACAACACTGTGCCCGTTGCAGCTCGGACAATGTCACCTCACA
CTGGTTCTCATATTCCTCACGTAATCTTGATGCCCACGAAGGAGCCAACA
TGAGTCTCCTGGGGAGTTCTGGTCATCCCTAGAATCAAACTCCCTGTGAT
TTGTGTGTGTGCGTGCGTTTCTTCCTTTAACCCGCCTTTTTATCCCTTTC
CTCCCATTCTTCATTTTCACATTACAGTTTTTGTGTCTTATATCCTTATT
CTTTACTCTTTTTTTTTTCTCACTTTCTTCCTCCTTTCCCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g08.b1 MSMg01no185_g08.b1 CHROMAT_FILE:
MSMg01no185_g08.b1 PHD_FILE: MSMg01no185_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:05 2005
         (264 letters)



>mm_chr11_52807826_52808489
          Length = 664

 Score =  424 bits (219), Expect = e-123
 Identities = 245/255 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggtaatccaatgccctctagcctttactggcatctgcatgtacatggngcgt 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 205 gaattccagggaatccaatgccctctagcctttactggcatctgcatgtacatggtgtgt 264

                                                                       
Query: 65  ataacttatcccagtgttcatgcactcgcataaataaaaatatttaagaacttcttttaa 124
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataacttatgcaagtgttcatgcactcgcataaataaaaatatttaagaacttcttttaa 324

                                                                       
Query: 125 aacaaaatattaaaaggaatgacacctataacccctgagattgacctctggcttccactt 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aacaaaatattaaaaggaatgacacctataatccctgagattgacctctggcttccactt 384

                                                                       
Query: 185 atgattttgcatactcgngcatacacgtgcatgtgcacatatgtacacacacacacacac 244
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgaatttgcatactcgtgcatacacgtgcatgtgcacatatgtacacacacacacacac 444

                          
Query: 245 acacacncncacaca 259
           |||||| | ||||||
Sbjct: 445 acacacacacacaca 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no185_g08.g1 MSMg01no185_g08.g1 CHROMAT_FILE:
MSMg01no185_g08.g1 PHD_FILE: MSMg01no185_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:05 2005
         (295 letters)



>mm_chr11_52832324_52833018
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgttgctttctggatatccaggatacctggtaggcacaaaggtcaaggcgggagtaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 attgttgctttctggatatccaggatacctggtaggcacaaaggtcaaggtgggagtaat 436

                                                                       
Query: 61  agccaagcggtacccaagctatgcgtaaggagattgcattctcctgaggccccaaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agccaagcggtacccaagctatgcgtaaggagattgcattctcctgaggccccaaagaga 376

                                                                       
Query: 121 atgagttccagcctgaaacccattagctccgagtctgttttcagaatttacagcctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgagttccagcctgaaacccattagctccgagtctgttttcagaatttacagcctccct 316

                                                                       
Query: 181 agagaatttccttggccctggggggagcgaggcagggcggagggctcgccctattacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agagaatttccttggccctggggggagcgaggcagggcggagggctcgccctattacttt 256

                                                                  
Query: 241 aacgcattcacatgtgggagcaaggtcagatggggatgtatgcttccattcctac 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacgcattcacatgtgggagcaaggtcagatggggatgtatgcttccattcctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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