BAC Information

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BAC

Clone NameMSMg01-185J04
Chromosome11 (Build37)
Map Location 19,888,639 - 19,888,877
singlet/doubletsinglet
Overlap geneSpred2
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937
Downstream geneActr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185J04.T7 (MSMg01no185_j04.b1)MSMg01-185J04.TJ (MSMg01no185_j04.g1)
ACCAG377523AG377524
length760912
length of high quality
(start - end)
315 (62 - 376)241 (130 - 370)
definitionCHROMAT_FILE: MSMg01no185_j04.b1 PHD_FILE: MSMg01no185_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:18 2005CHROMAT_FILE: MSMg01no185_j04.g1 PHD_FILE: MSMg01no185_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATATTTTCAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCAACAACCACATGATGGCTCACAACCATC
TGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACATC
AACAGTGTACTCGTATACATGAAATAAATCTTAAAAGAAAGAAAGGAAAG
AAAGAAACAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGGAAGAAAGAAAAAAGAGTTGCTGTGGTCATTGTGTC
TCTTCACAGCAATAGAAACCCCAAGGAAGGATCTAACCCAGGGCTTCATC
CATGCTATGCTGCCATCTGGAATATATTTTTTTTTACTTCCCACCCACCT
CTATTTAACCATATCCAGGGGTTAGGTATGCTCCCCACGCCTCAATTGAA
GAGTGTAGCCACCCATACATCGCCAAAATTTTAACGCAGAATTGCTCCTG
TCTAGAGGAAATACAGGAACAAAGAGTACAACGTAGACTGAGGGAATGGC
CATCCAGAGACTGCCCCACCTGGGGATCCATCCCCCATGCAGATACTAAA
CCCAGACAGTATTGTGGATGCTAGCAAGAGCTTGCTGATAGGAGTTTGAT
ATCGCTTGTCTGCTGAGAGTCTCTGCCAGATCTTGAACAATACACATGTG
TATGCTCACCGTCCACTTTTCCCATCTAGCATATGTCACCCACAGTGCAT
AATTTTAATC
TTATTTAACTTCTCTNNTTTCTTTTTATCCTCTACTTTTTTAAANNNANN
AATCTATGATAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGAATTTTTGTTTGTTTG
TTTGTTTGTTTGTTTTTTAAAAACTGTGGCTCGCATGTGCTTTTGGATCT
GGATCTGTTGTTGCCAGAGCGGCTCACAAGCTTAACTTCCTGGAGCAAGT
GTTTCCGACTCAGTAGTGATTACAGGTGCAGTCAGCGGCCCACAGCTGAG
ATAGAGGTGAGGCCAGTCCAGGCAGGATGGGGGTGGGGGCCTGGGCTATA
CTTATGCTCTCTGATTTCCGGGGCCCCAGTTTGTATTTTTGAGCTTTCCA
TTTGTACCGATTAAAGCATATTTTTTTTTCTCCCCCCCCCCCACCATAAT
CTACCTTCTTTGAAGTCCGCATGCACCTCCCCCCCCAAAAAAAAAAAAAA
ATTCCCTATTTAAATCTTGTTCAACCTTTTATTTTTCTCCTTCATTCATA
TTCCTTGATCTTTTCTTTTTTCTCACCTCTGCATCTTTTCTAATTCTTTA
ACTATTTTCTCTTTATTTCTCCTCTCTTTCTATCTCTTTTATTTTACTCT
CTTATAATTCTTCCTCTTATCTCTCACCCACCCCTCAATATTTTCTTTAC
ATTAAATTTTTTAATTATATTCCATAATTATACTAATTTCGCATTCATAT
TCTTTACATCGTCTCAATCTACTCCCCGTTTTCCGCCCTATAAATTAATA
TTTTTATATTCGTTTCACTTTTCTTTTTTCTTTCGCCATACAATCAATTA
GCGCAATNTTTTATTCCTTATCGATATAATATCACCATAGATGCTATTTT
CTCATTTCGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_j04.g1 MSMg01no185_j04.g1 CHROMAT_FILE:
MSMg01no185_j04.g1 PHD_FILE: MSMg01no185_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:18 2005
         (241 letters)



>mm_chr11_19888422_19889062
          Length = 641

 Score =  366 bits (189), Expect = e-106
 Identities = 219/239 (91%), Gaps = 17/239 (7%)
 Strand = Plus / Plus

                                                                       
Query: 18  tttgtttgtttgtttgttttttaaaaactgtggctcgcatgtgcttttggatctggatct 77
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 218 tttgtttgtttgtttgttttttaaaaactgtggtttgcatgtgcttttggatctggatct 277

                                                                       
Query: 78  gttgttgccagagcggctcacaagcttaacttcctggagcaagtgtttccgactcagtag 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gttgttgccagagcggctcacaagcttaacttcctggagcaagtgtttccgactcagtag 337

                                                                       
Query: 138 tgattacaggtgcagtcagcggcccacagctgagatagaggtgaggcc-----ag----- 187
           ||||||||||||||||||||||||||||||||||||||||||||||||     ||     
Sbjct: 338 tgattacaggtgcagtcagcggcccacagctgagatagaggtgaggccggtccaggcagg 397

                                                                      
Query: 188 -------tccaggcaggatgggggtgggggcctgggctatacttatgctctctgatttc 239
                  ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 398 atgggggtccaggcaggatgggggtgggggcctgggctatacttatgctctctgctttc 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)