Query= MSMg01no186_d19.b1 MSMg01no186_d19.b1 CHROMAT_FILE:
MSMg01no186_d19.b1 PHD_FILE: MSMg01no186_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:10 2005
(589 letters)
>mm_chr11_56046226_56047214
Length = 989
Score = 949 bits (491), Expect = 0.0
Identities = 527/543 (97%), Gaps = 7/543 (1%)
Strand = Plus / Minus
Query: 54 atttagatactgcatagtagcaaatcagctatgactgagagggaacctggacacttcttt 113
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 989 atttagatactgcatagtagcaaatcagctatgactgagagggaacccggacacttcttt 930
Query: 114 gaactggaaggggtcttagaagcaagcctggcatgtcatttttctccctttgtgaattct 173
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 929 gaactggaaggggtcttagaagtaagcctggcatgtcatttttctccctttgtgaattct 870
Query: 174 gctaagtcatttatcttcttagaatcagccagcctgcttgggctgttggtgaggcaccaa 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gctaagtcatttatcttcttagaatcagccagcctgcttgggctgttggtgaggcaccaa 810
Query: 234 atgaccttacata-------ccccccgctgaatgccttattcataaggagaaaagaataa 286
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 atgaccttacatacccccccccccccgctgaatgccttattcataaggagaaaagaataa 750
Query: 287 agctgttttcatctgttctgtggcttccagattatgacagaaataaatacatctctgcat 346
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 749 agctgttttcatctgttctgtggcttccagattaagacagaaataaataaatctctgcat 690
Query: 347 ctttctcaaggtttttctatcagattcccccgctgtagcagcagctatcacagctacaca 406
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 689 ctttctcaaggtttttctatcagattcccttgctgtagcagcagctatcacagctacaca 630
Query: 407 atgtgaaacaattttctagctaacttgtcgcaagtcgggacaggagattgtgttcaaaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgtgaaacaattttctagctaacttgtcgcaagtcgggacaggagattgtgttcaaaat 570
Query: 467 tcagttccccagttcccatttgtcttcccagacaaacaaaaacatcatagaagaaactaa 526
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 569 tcagttccccagttcccatttgtcttcccagacaaacaagaacatcatagaagaaactaa 510
Query: 527 tagcagtacaaccactaatacagggtggaaataagtttgactttataagtaatgcaaata 586
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 509 tagcagtacaaccactaaaacaggatggaaataagtttgactttataagtaatgcaaata 450
Query: 587 gga 589
|||
Sbjct: 449 gga 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_d19.g1 MSMg01no186_d19.g1 CHROMAT_FILE:
MSMg01no186_d19.g1 PHD_FILE: MSMg01no186_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:10 2005
(293 letters)
>mm_chr11_55877352_55878044
Length = 693
Score = 565 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 1 atgtaatcaaaattcaacaaaggcacagggcccagccatctttggaagagctttgtctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtaatcaaaattcaacaaaggcacagggcccagccatctttggaagagctttgtctga 260
Query: 61 gaataaataataagcctcagttgctgggtcacaagtgtgaagacaaggaagctagacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataaataataagcctcagttgctgggtcacaagtgtgaagacaaggaagctagacata 320
Query: 121 agaactttcacatgagtactaaaaatagcagcttagcccagtaaccaggacagtctcccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaactttcacatgagtactaaaaatagcagcttagcccagtaaccaggacagtctcccg 380
Query: 181 ctgagaagaactatatgtcatgttgagtaaaggcacatagagtgagaaccatgtgggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagaagaactatatgtcatgttgagtaaaggcacatagagtgagaaccatgtgggtct 440
Query: 241 gatggagatgctgctattgctaagaagggcatgaccactcatgagaccatac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatggagatgctgctattgctaagaagggcatgaccactcatgagaccatac 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
