BAC Information

Click to search

BAC

Clone NameMSMg01-186J11
Chromosome11 (Build37)
Map Location 104,025,344 - 104,073,056
singlet/doubletdoublet
Overlap geneCrhr1, 4933407P14Rik
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream geneMapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186J11.T7 (MSMg01no186_j11.b1)MSMg01-186J11.TJ (MSMg01no186_j11.g1)
ACCAG378226AG378227
length744766
length of high quality
(start - end)		369 (36 - 404)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no186_j11.b1 PHD_FILE: MSMg01no186_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:37 2005CHROMAT_FILE: MSMg01no186_j11.g1 PHD_FILE: MSMg01no186_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,025,344 - 104,025,708)(104,072,772 - 104,073,056)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCC
TGGTCCTCTTCCTTCCTCCCTTCCTCTCCCTCCCACCTTCCCTCTCTCCC
TTCCTCTCACACTTGTCTTTGGCTGCTTGCACTGGGTGTGGGACAGGGCT
GGGGTACAGCCGAGCCCAACAGTAGCTGGATCCAAAGACACCTAAGAGTG
ACATCAAAGTCCGGCCGTGAGGGCCTGTGTCAGAACCAAGGCTGGAAGTA
GGGCACTGATGCAGTTTTTAAAAGCCCCAGAGGTGCTTTGCAAAACTTCA
GTGGTTTTGAACAGCTGTTGCTTATCCGGAATGCAAGATTTAAAAGGTCC
TATTGGGAATACCCCGACAAGCGCCCCGCCCGTTGCCATCCCTAGCCGGT
AGCTCCCCCCCACTGAGTGTTCAAGTCAATGCGCATGGTGTTCTTGGTCT
TACCCAGACGTCCCCTGCCATACTAACTACTGGCTGTCTGCTTATTCATG
TGCTCATCGATCCTATAGATCGTCTTATGCTCAATTTACATTTCCCTTCT
TCTTATCATTTTTATTTTCCCCTCTTTCTCTTTATTCCGCAAGCGTCTTT
TTCTTATCTGCTTATTTTCTCCCTCTCTCCCTCTATATTTTCCCCTCATT
ATTTTCACCCTTTCCTTTTTATTTTTCAAGCACCCTCCCTTTTGACTTTC
TCTATCTTACCCTCACATACCTCTTTTATAAATCATATGCCTGN

TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTTGACCAAGCTGGCCTTG
AGCTCACACAGATCCACCTGCCTCTACCTCTCAAGTGCTGGGTTTAAAGT
TGTGTGCTACCATGCCCAGCTCAAATGCAGAAGGTTTTAAAAAACAGTGT
GAAGAGTTCATTAACAAACACATTGTTGAGTAAAAAGCACCAGCATGCGA
AAAAGAAACCCCCAAGTCTTGTGCGCTATGTTTTGGCTGTTTACAGATGC
AGGACGGTCACACAGAACATGGGCACAGGGAGTACCCTTCTCTCTCTGCC
GCAAGATATGGTTTTTTGGCTCCACCACTCACAGATGGGCTTTTGTGTCC
AACAATAAAAGCATCTCCCCCCTCCATGCTTTGTTGATTCATGCACAATG
ATGTCTTTCTCTTGCCAGTGACCCTGGTGTTGGAATATGCAATTATGATC
ATCATCACAGTTCAGTTTAATGACTCTATTAACTTGCTCTCTTACATCTA
CTTTCCTTTTTCTATAACCGCTTTTTTTTTTTTCTCCCTAAATATATTTC
CCCTAATATTATATCACACATATCATAATCTTTTACAAAATTCTCTATTC
TATACCTTTTTCATTTTATTAATTTTATCCATCCCCTCACTCACATTCAC
CCCCTTATCCCTTATTATTATCCTTCTTCCAGCCCCTTCCCACTTTATTT
TTACCGCTCCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_j11.b1 MSMg01no186_j11.b1 CHROMAT_FILE:
MSMg01no186_j11.b1 PHD_FILE: MSMg01no186_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:37 2005
         (369 letters)



>mm_chr11_104025140_104025908
          Length = 769

 Score =  652 bits (337), Expect = 0.0
 Identities = 358/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcctggtcctcttccttcctcccttcctctccctcccaccttccctctctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcctggtcctcttccttcctcccttcctctccctcccaccttccctctctcc 264

                                                                       
Query: 65  cttcctctcacacttgtctttggctgcttgcactgggtgtgggacagggctggggtacag 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 cttcctctcacacttgtctttggctgcttgcattgggtgtgggacagggctggggtacag 324

                                                                       
Query: 125 ccgagcccaacagtagctggatccaaagacacctaagagtgacatcaaagtccggccgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccgagcccaacagtagctggatccaaagacacctaagagtgacatcaaagtccggccgtg 384

                                                                       
Query: 185 agggcctgtgtcagaaccaaggctggaagtagggcactgatgcagtttttaaaagcccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 agggcctgtgtcagaaccaaggctggaagtagggcactgatgcagttttaaaaagcccca 444

                                                                       
Query: 245 gaggtgctttgcaaaacttcagtggttttgaacagctgttgcttatccggaatgcaagat 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gaggtgctttgcaaaacttcagtggttttgagcagctgttgcttatccggaatgcaagat 504

                                                                       
Query: 305 ttaaaaggtcctattgggaataccccgacaagcgccccgcccgttgccatccctagccgg 364
           ||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 505 ttaaaaggtccaaatgggaatacaccgagaagcgccccgcccgttgccatccctagccgg 564

                
Query: 365 tagct 369
           |||||
Sbjct: 565 tagct 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_j11.g1 MSMg01no186_j11.g1 CHROMAT_FILE:
MSMg01no186_j11.g1 PHD_FILE: MSMg01no186_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:37 2005
         (287 letters)



>mm_chr11_104072477_104073163
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgttgaccaagctggccttgagctcacacagatccacctgcctctacctctcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 actctgttgaccaagctggccttgagctcacacagatccacctgcctctacctctcaagt 521

                                                                       
Query: 61  gctgggtttaaagttgtgtgctaccatgcccagctcaaatgcagaaggttttaaaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gctgggtttaaagttgtgtgctaccatgcccagctcaaatgcagaaggttttaaaaaaca 461

                                                                       
Query: 121 gtgtgaagagttcattaacaaacacattgttgagtaaaaagcaccagcatgcgaaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtgtgaagagttcattaacaaacacattgttgagtaaaaagcaccagcatgcgaaaaaga 401

                                                                       
Query: 181 aacccccaagtcttgtgcgctatgttttggctgtttacagatgcaggacggtcacacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacccccaagtcttgtgcgctatgttttggctgtttacagatgcaggacggtcacacaga 341

                                                        
Query: 241 acatgggcacagggagtacccttctctctctgccgcaagatatgg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acatgggcacagggagtacccttctctctctgccgcaagatatgg 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |