BAC Information

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BAC

Clone NameMSMg01-186K08
Chromosome11 (Build37)
Map Location 30,705,143 - 30,742,468
singlet/doubletdoublet
Overlap genePsme4
Upstream geneC230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243
Downstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K08.T7 (MSMg01no186_k08.b1)MSMg01-186K08.TJ (MSMg01no186_k08.g1)
ACCAG378265AG378266
length784833
length of high quality
(start - end)		326 (46 - 371)182 (77 - 258)
definitionCHROMAT_FILE: MSMg01no186_k08.b1 PHD_FILE: MSMg01no186_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:42 2005CHROMAT_FILE: MSMg01no186_k08.g1 PHD_FILE: MSMg01no186_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,742,149 - 30,742,468)(30,705,143 - 30,705,324)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTTCAAGCTCAATTGTAACACTTTTAGAACAAAGCCAAAAAAC
TGAACCCTAAGGTTTGCCCCTCTGCTTACAAAATAGATTTTTTTAATTTC
TAAAAGTCAAACTTTCCTATTAGTCTGTAAGTAATAGCTATAGCATTAAA
TGTATAAAATGCTTGATTATGCCTCCCAATATTTGTTGAACAAATTCTTA
TTGCTTCTGAGCAAACAGAAGGAGATGCCCAATCATTCCTTTCAAGATAT
TGATTAGGATATATGTTGTCTATGAAGAATTTAAAGAGGTTGCTGAAGTA
AATATTCTCAAACCCAACATTTTATCCCCCCCCCCTCACGTATGTACCTT
TCGAACAACAATTGCATCACGCCCCGAGATTTTCAACAAAAAAACGTATG
GCACGAAGAGGCTACACTCTGTCATCCCTTAGGAGTACAGACAGAAGCCT
GATTCCTATATGCTCAAATTTCCAAGGTCTGCGGATTGTCATAATGAAAC
AATGTTCTTATTATTTCCAATTCCTTTGAGCACCCCCATTCTCAACTCTT
TTTGTTTAACACTTATATAATATACCATTATACTTTATTTTTAATTCATA
ATTCTTCCTTTAGTTATATCCTACATCTCACTTTTTATTAATTTCGCTTT
TTTATTTTCCTATCTATATCTTTTATTAATCTAAAAATATAATAATCCTC
TTTATCTCTTATACCTTAGTTGTATATCTTTTAC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTTAAAAAGGTTTTTATAAG
TGTGTATGCATGCACATGTGCGCACACCTGTGGGGCTGTCTGTTGGTGGA
CAGTTGGTGGGTACTGGTGCCTGAGGATGCCGGAGGTATCACATCCCCTT
GAACTGGAGCTATCGCTGTGTAGTGTTTTGTTTTCTCAGTGCTTAGTGTA
TTGAGGGTGGGGTGTTGTTGTTTTGTGNGTGTTTTTTTTTTTGTNTTTTT
NGTNTTGTNTTTGTTTTTTNTTTTTTTTTGGTTTGTGTTGGTTTGGGGGG
GGGGNNNNGGTTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCGGGGG
GGGGGGTTTTTTTGTGTTTTTTTTTTGCCCCCCCCCCTTCAAAAAAAAAA
AAAAAAATTTTTGGGTGGGGGTGGTTTTTTTCTTCCTCCCCCTTCCACTC
CCTTTTCTCTTAATTCTCCTCTTTTTATTCTTTCATTCTCTCCCTACTTT
CTCATAATTTATCTTACTACCATCCTCCCTCCCACTATTACCCAACATAT
TCTTATTCTTTTATTTCTTTTTTACCTCTTTTTTTCCTTTTTCTTTTTCT
CCTTTACTCTTCCCACCCTCTTCTCCTTCCCCTCTCCCTTATCTACTTTC
TATTCTAATTTATTCTCTTCCACACACTTTAATTTCTCATCTTAATCCAT
TACCCCAACTCCTCCCCTACCTCCTCTACTTAACACCTCTCCTCTTCCTC
ATCTCTCCTTTACTCATATCATTCTCTTAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k08.b1 MSMg01no186_k08.b1 CHROMAT_FILE:
MSMg01no186_k08.b1 PHD_FILE: MSMg01no186_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:42 2005
         (326 letters)



>mm_chr11_30741945_30742670
          Length = 726

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcttcaagctcaattgtaacacttttagaacaaagccaaaaaactgaacccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcttcttcaagctcaattgtaacacttttagaacaaagccaaaaaactgaacccta 465

                                                                       
Query: 65  aggtttgcccctctgcttacaaaatagatttttttaatttctaaaagtcaaactttccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aggtttgcccctctgcttacaaaatagatttttttaatttctaaaagtcaaactttccta 405

                                                                       
Query: 125 ttagtctgtaagtaatagctatagcattaaatgtataaaatgcttgattatgcctcccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttagtctgtaagtaatagctatagcattaaatgtataaaatgcttgattatgcctcccaa 345

                                                                       
Query: 185 tatttgttgaacaaattcttattgcttctgagcaaacagaaggagatgcccaatcattcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tatttgttgaacaaattcttattgcttctgagcaaacagaaggagatgcccaatcattcc 285

                                                                       
Query: 245 tttcaagatattgattaggatatatgttgtctatgaagaatttaaagaggttgctgaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttcaagatattgattaggatatatgttgtctatgaagaatttaaagaggttgctgaagt 225

                               
Query: 305 aaatattctcaaacccaaca 324
           ||||||||||||||||||||
Sbjct: 224 aaatattctcaaacccaaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_k08.g1 MSMg01no186_k08.g1 CHROMAT_FILE:
MSMg01no186_k08.g1 PHD_FILE: MSMg01no186_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:42 2005
         (182 letters)



>mm_chr11_30704943_30705524
          Length = 582

 Score =  352 bits (182), Expect = e-102
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttttaaaaaggtttttataagtgtgtatgcatgcacatgtgcgcacacctgtggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttttaaaaaggtttttataagtgtgtatgcatgcacatgtgcgcacacctgtggggc 260

                                                                       
Query: 61  tgtctgttggtggacagttggtgggtactggtgcctgaggatgccggaggtatcacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctgttggtggacagttggtgggtactggtgcctgaggatgccggaggtatcacatcc 320

                                                                       
Query: 121 ccttgaactggagctatcgctgtgtagtgttttgttttctcagtgcttagtgtattgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgaactggagctatcgctgtgtagtgttttgttttctcagtgcttagtgtattgagg 380

             
Query: 181 gt 182
           ||
Sbjct: 381 gt 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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