BAC Information

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BAC

Clone NameMSMg01-187B09
Chromosome11 (Build37)
Map Location 114,110,548 - 114,110,834
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187B09.T7 (MSMg01no187_b09.b1)MSMg01-187B09.TJ (MSMg01no187_b09.g1)
ACCAG378564AG378565
length876737
length of high quality
(start - end)
88 (213 - 300)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no187_b09.b1 PHD_FILE: MSMg01no187_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:17 2005CHROMAT_FILE: MSMg01no187_b09.g1 PHD_FILE: MSMg01no187_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTTTTTTTNTTTNNNNTTTTTTATACCCAAATACCCATCTCCNNCCCC
ATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTGCAGAATCCAATCCATCACAGGAAAATGGAAAATCTGAA
TAGTATTCGTTATATTGGTTCTTAACCCCATGAACTTAAGAGCAACTTGT
CAGGAAGAAATAAATACCCACTATGGTTTGCTAGTGAGCTCTCTCAAAAT
TTTAAGGCGGAGTGCATATCTCACTCCCAGGTATATATGACATATGAGGT
GTGGAGACCCCCATTCACTTCCTGAGGTCAGCATATTTCCTAGACTAAAT
CTAACATACTTCTAGGAAAGGAAGTTATTATATTTAGGTACACTCATAAA
TTTCATTTACATAGACACCTTTTTTTTCCTACGAACAGTACTGCGAGATT
TTTGATCTCAATATTTATTTTTTTCCCCCCCCTTTTTATATATGTTAATC
CCGCCTGCTCTTTCTGCACTTTTTTCTATCTCAATTTTTTATTCACTACC
TCACTCTTTGTTTCCTCACTCCCCTTTCCCTCCCTTTTTTCCACCTTTTT
TCCCCCTTTTACTTACCCAAATTTTTTCATTACTTTTTCCTCCCCACTTA
TATTACATTATTCCCATCCCTTTTTTTTTTTTCCACCTTTCCCCTTCCTT
TTCCTCACCTTCCCCCCCCTCTTTCATTTTCCCCACACCAACTTTTCCTT
TTTTTTTTCCCACTTTTCCCTCTCCCCCCTCTTTTACCCCTCCCCCTTCT
CCACACTTTTTTTTTCCCCCTTTCCATTATACCACTTTTATCCATCTTTC
ATCACTTTCTTCGCATTCTTTTCTTN
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACTATGCAAAGGAGGACAGTTGA
GACTGGCCAGTGCACAGCTCGGAGGACAGAGTAAGCTGTTATGCCATTTC
ACTTCTCCTTGTACCATCTCAGGTCTGCAAATCAGAGATATGCAAATCAG
ATCAGCCCCAGTCAAAGGGTTGGGTTCTAGAGTTTGAGGACAGCTACGTG
GCATGTCATTTCCTCCCATTAGCGATTAGGAATTTCTGACCTAATCGAGA
GTCGACCTGCTGGGTCTTCTGGTTCTTTACTAATGGTCTCTCCTTCACAG
CACCCACCTGTATTTTCTATAACCCCCCCCCCCTTGCTGCTACTGCAGCA
TAGACTTCCCACGAGCACCCCACCCATATACACTGACTGTCTAGATCTCC
CTCTAGCCATGACACAGTGGCAACAGGAACAAGGTAGCCCAGTGTGCTTG
CTTGCATGCATGTATCCCAGTAGTCAACAGTCATCCCTGATACCTGTGCT
AGGTGCCGTGTATTAGATAAGAAGCCTGGGTCCTCTCTCCCTCCTCATGC
CCTCCATTGCTGTATACTCGTGGCTACCCACAAATCCCATGCATCCCATT
GGAAGTATTTTTCCTAGACTTCTTTCTATCTTCTACTGGAATAGGTCCCT
TTTCCTGAGGTGTACCCGGGTTCCCTGTTCTTAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_b09.g1 MSMg01no187_b09.g1 CHROMAT_FILE:
MSMg01no187_b09.g1 PHD_FILE: MSMg01no187_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:17 2005
         (291 letters)



>mm_chr11_114110348_114111038
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acactatgcaaaggaggacagttgagactggccagtgcacagctcggaggacagagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acactatgcaaaggaggacagttgagactggccagtgcacagctcggaggacagagtaag 428

                                                                       
Query: 61  ctgttatgccatttcacttctccttgtaccatctcaggtctgcaaatcagagatatgcaa 120
           |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 427 ctgttacgccatttcacttctccttgtaccatctcaggcctgcaagtcagagatatgcaa 368

                                                                       
Query: 121 atcagatcagccccagtcaaagggttgggttctagagtttgaggacagctacgtggcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atcagatcagccccagtcaaagggttgggttctagagtttgaggacagctacgtggcatg 308

                                                                       
Query: 181 tcatttcctcccattagcgattaggaatttctgacctaatcgagagtcgacctgctgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcatttcctcccattagcgattaggaatttctgacctaatcgagagtcgacctgctgggt 248

                                                          
Query: 241 cttctggttctttactaatggtctctccttcacagcacccacctgta 287
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 247 cttctggttctttactaatggtctttccttcacagcacccacctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)