BAC Information

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BAC

Clone NameMSMg01-187F08
Chromosome11 (Build37)
Map Location 19,976,072 - 19,976,385
singlet/doubletsinglet
Overlap geneActr2
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
Downstream geneRab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187F08.T7 (MSMg01no187_f08.b1)MSMg01-187F08.TJ (MSMg01no187_f08.g1)
ACCAG378717AG378718
length702782
length of high quality
(start - end)
317 (23 - 339)291 (86 - 376)
definitionCHROMAT_FILE: MSMg01no187_f08.b1 PHD_FILE: MSMg01no187_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:37 2005CHROMAT_FILE: MSMg01no187_f08.g1 PHD_FILE: MSMg01no187_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCCAGCCTATTCTTA
GGACTACACAGTGAGACCCTGTTTAAAAAAAGAAAAAATTAACTAGCTAC
ATTTAAAGATCTGGTGAGATGGTTCAATGGGGAAAGATACCTCCTGCCAA
TCCTGATGACCTCAGGTTGATCCCTGGAATCCAAATGGAGGAAGGAAATA
AAGCCAACTCCTGACTTCCACAAGTGTGCCATGAAACCCACCATCACCAT
CAAAACATACACACCAGATAACTAACTAGCTAGCTAGCTAACTGAAATAG
AATTAAAACACGTGCAGTGCTGTAAATCAAACCCAGTGTTTCTTTTTCTC
CCCCCCCCCTTGTTAGCATTCTTTCTAGTCTCTGCCGAACAGCCACCCAA
CAACAAACAAATATGTCTGGCTTGCTACAAAAGGGACTGTTTGGCTTCCC
TTCTCTCTCTGACACCCCCTCCCCCATGTTCCTGGTCAGCCTCTTCTCTT
CTCTTCTCTCTCTCCTTTCCTTTTTCCTCTGCCTCTACTCCCTTCTCAAC
CCCCCATCCCATGCACCCAAATAAATCCTATTCTATACTGGCTGCTACCT
CCGCGCGGATTCCTCCCATTTAACTTCACCCCTCTCTATCCCACATATTC
CTGTTTTTACACAACCTCATATTACACCTCTATCCAATAAGGATTAACCA
TT
NNNNAAATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCCCAGCATCTA
CATAGCAGCTCACAACTGTCTGTTAACTCTCAGTCCTAGATCAGGCAGCA
ATAGATTCACACACACACACACACACACACACACTCACACGCACACACGC
GCGCACACACATTCCCAAAGACACACACAAGTAAAACACTCAATGCACAT
AAAAATAAATAAATCATTAAAAAATGGGAAAAAATAAAATAAATCTTTTA
AAAAATGAGAGAAAAGAAAAGTGAATGCTAGGCATACACTGGTGATAGGA
GCATTTTTAAGTGAGTTTTTAATCATTTTATAGAGACACTCACAAGAGCA
CAGTATAGGCTGGACATGCTGGCACAACCATTTAGTCCCAGCACATAGGA
GGGAGAGGCAGGTGAAAGTCAGTGAGTTTGAGGCCAGCCTGGTCTTCAGA
GTGAATTTCAGGACAGTCAGGACTATACAGAGAAACCCTGTCTCTAAAAG
CCTCAAGAAATACCTCATCTTCTCCAATACTCTTACCTCAGGATAACAAA
ACTATCTGAGTAAATGAACACCCCAATAAATATGCAAGTAAATTAATACC
CAATAAAACTACTGAGCCGAATTAAAGGTCAAACCCCAGCCAGGTGCTAC
GTAAAAAGATTGAACCCTTAATAATCAAAAAAAATCACACTTCCGGGGGG
TGCGATTAGACTGCTCTCCCATATTCCAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_f08.b1 MSMg01no187_f08.b1 CHROMAT_FILE:
MSMg01no187_f08.b1 PHD_FILE: MSMg01no187_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:37 2005
         (317 letters)



>mm_chr11_19975868_19976585
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggccagcctattcttaggactacacagtgagaccctgtttaaaaaaagaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggccagcctattcttaggactacacagtgagaccctgtttaaaaaaagaaaa 264

                                                                       
Query: 65  aattaactagctacatttaaagatctggtgagatggttcaatggggaaagatacctcctg 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 aattaactagctacatttaaagatctggtgagatggttcagtggggaaagatacctcctg 324

                                                                       
Query: 125 ccaatcctgatgacctcaggttgatccctggaatccaaatggaggaaggaaataaagcca 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaatcctgatgacttcaggttgatccctggaatccaaatggaggaaggaaataaagcca 384

                                                                       
Query: 185 actcctgactt-ccacaagtgtgccatgaaacccaccatcaccatcaaaacatacacacc 243
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 actcctgactttccacaagtgtgccatggaacccaccatcaccatcaaaacatacacacc 444

                                                                       
Query: 244 agataactaactagctagctagctaactgaaatagaattaaaacacgtgcagtgctgtaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agataactaactagctagctagctaactgaaatagaattaaaacacgtgcagtgctgtaa 504

                         
Query: 304 atcaaacccagtgt 317
           ||||||||||||||
Sbjct: 505 atcaaacccagtgt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)