BAC Information

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BAC

Clone NameMSMg01-188A06
Chromosome11 (Build37)
Map Location 93,245,727 - 93,281,730
singlet/doubletdoublet
Overlap geneCar10
Upstream geneLOC382545, LOC100039286
Downstream geneLOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188A06.T7 (MSMg01no188_a06.b1)MSMg01-188A06.TJ (MSMg01no188_a06.g1)
ACCAG379171AG379172
length779728
length of high quality
(start - end)		283 (59 - 341)621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no188_a06.b1 PHD_FILE: MSMg01no188_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:31 2005CHROMAT_FILE: MSMg01no188_a06.g1 PHD_FILE: MSMg01no188_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,245,727 - 93,246,003)(93,281,225 - 93,281,730)
sequence
TTTTGGTTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCACTGCTCAGCGCTCAGGGCGTCTTAATGTCGT
TGAATCTTCCAGAACTCAGGAGTTGGGTAAATTGGGTCTGAGGAACAAGG
GAGACTGTATTCAGTGTATTACTGTAGAATGTCAAGCCAGAGCTCAGAGG
CTTAGGCAATGAATATTTATCATCACAAAGACCCTATAGGTCAAGAATTT
GGAAGCAGCTTAATTGTAATTCTGGTCCAGAGTTTCTCAAGTAGCGTGGT
CAGTATATGAGCAAGGTTATTATGTGACATCTTCTCTTATAGGGAGGGAC
TGTGACATGGGATATCCTCCCTGGAGTATTTTTTTTCCCGCCCCCCTCAA
ATAGGATCAGAAGTCTATATTCAAGCTGCACCCGACTCTCTGTAAGACGA
GTACCCTAATATCAGGATATGACAGCCTTTTCCTAGAACAAGATGTCTGA
TAGAGATAGGATAAAAATACCATGACCTTATAATGTAGACTCTATGTCTG
TGTCCTAAGCTTCCTTATCAAAGTACATATACTGTCTGCTTACCGTAGAG
TATATCCTTTTTCCCTTTTTGAATGTAATACACCTCACACCATGGTCTTG
CGGTTTATATTCTATTTTAGTTCTCCTTTATATGTATTATTCTAATTCCT
ATCACCTATAGCTAGTCCCAATATCTTTATGATCATTTTGATTTTTTCCT
CCTTCTCCTAACTTCCCTATTTTATCTTA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACCAAATCAAACCAAACCAAAC
CAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAC
CAAACCAAACCAAATTAATTTTTCTCGTAAAGAGCTACAAAACCTTCAGC
AGACCAAATTAGCACCTGACTATTTCCTTTTACTTAAAAATACTTTGTTT
GCTTCTCTTATATTAGTGCAGAGTCAAGTGAGTTTTGACTGGAGGTGCTG
GAAGGGAGTTTAAACACTATTTCTAATCTAGTCTTTCTTGTCAGTCGAGG
AAGCAGGAGCCCATGGAGACTTGTTGGCTTGCTCCAGGTCATTAAGGAAT
TGTGAGTTAAGGGTAAATCTCCCAACCTAGATTCCTGAGGATCTGCAGCC
TCCATGTGGCTCTGTTGCCTCCTGGAGATGGAACTATTTATTTCAGAGTC
CTTGATTTCGTGATGATGGTTTTCCAAGTATAGAAATCATGAATGATGTA
TCTTTTTCTCTCAGAGATGGGAGCACAGCCTGTAAGTTTCTAGCTTTCTG
CCACTGAAACCCTATGGGACCCTTGGACTAGTTTCATAAGCTCCTCCAGG
GTCTTAGCTTTCTGCCAAGTAAAAGATGAATGAGAAGAGCCCTTGCCTCA
GAAGTGTGAGACATTAAAAGAGATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_a06.b1 MSMg01no188_a06.b1 CHROMAT_FILE:
MSMg01no188_a06.b1 PHD_FILE: MSMg01no188_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:31 2005
         (283 letters)



>mm_chr11_93245523_93246205
          Length = 683

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgctcagcgctcagggcgtcttaatgtcgttgaatcttccagaactcaggag 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgctcagcgctcagggcatcttaatgtcgttgaatcttccagaactcaggag 264

                                                                       
Query: 65  ttgggtaaattgggtctgaggaacaagggagactgtattcagtgtattactgtagaatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgggtaaattgggtctgaggaacaagggagactgtattcagtgtattactgtagaatgt 324

                                                                       
Query: 125 caagccagagctcagaggcttaggcaatgaatatttatcatcacaaagaccctataggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 caagccagagctcagaggcttaggcaatgaatatttatcatcacaaagaccctatgggtc 384

                                                                       
Query: 185 aagaatttggaagcagcttaattgtaattctggtccagagtttctcaagtagcgtggtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaatttggaagcagcttaattgtaattctggtccagagtttctcaagtagcgtggtca 444

                                                
Query: 245 gtatatgagcaaggttattatgtgacatcttctctta 281
           |||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatatgagcaaggttattatgtgacatcttctctta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no188_a06.g1 MSMg01no188_a06.g1 CHROMAT_FILE:
MSMg01no188_a06.g1 PHD_FILE: MSMg01no188_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:31 2005
         (621 letters)



>mm_chr11_93280710_93281730
          Length = 1021

 Score =  948 bits (490), Expect = 0.0
 Identities = 502/506 (99%)
 Strand = Plus / Minus

                                                                        
Query: 116  accttcagcagaccaaattagcacctgactatttccttttacttaaaaatactttgtttg 175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 accttcagcagaccaaattagcacctgactatttccttttacttaaaaatactttgtttg 962

                                                                        
Query: 176  cttctcttatattagtgcagagtcaagtgagttttgactggaggtgctggaagggagttt 235
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 961  cttctcttatattagtgcagagtcaagtgagttttgactggaggtgctggaaaggagttt 902

                                                                        
Query: 236  aaacactatttctaatctagtctttcttgtcagtcgaggaagcaggagcccatggagact 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  aaacactatttctaatctagtctttcttgtcagtcgaggaagcaggagcccatggagact 842

                                                                        
Query: 296  tgttggcttgctccaggtcattaaggaattgtgagttaagggtaaatctcccaacctaga 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tgttggcttgctccaggtcattaaggaattgtgagttaagggtaaatctcccaacctaga 782

                                                                        
Query: 356  ttcctgaggatctgcagcctccatgtggctctgttgcctcctggagatggaactatttat 415
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 781  ttcctgaggatctgcagcctccacgtggctctgttgcctcctggagatggaactatttat 722

                                                                        
Query: 416  ttcagagtccttgatttcgtgatgatggttttccaagtatagaaatcatgaatgatgtat 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 721  ttcagagtccttgatttcgtgatgatggttttccaagtatagaaatcatgactgatgtat 662

                                                                        
Query: 476  ctttttctctcagagatgggagcacagcctgtaagtttctagctttctgccactgaaacc 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ctttttctctcagagatgggagcacagcctgtaagtttctagctttctgccactgaaacc 602

                                                                        
Query: 536  ctatgggacccttggactagtttcataagctcctccagggtcttagctttctgccaagta 595
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 601  ctatgggacccttggactagtttcataagctcctccagggtcttagctttctgccatgta 542

                                      
Query: 596  aaagatgaatgagaagagcccttgcc 621
            ||||||||||||||||||||||||||
Sbjct: 541  aaagatgaatgagaagagcccttgcc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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