Query= MSMg01no188_b03.b1 MSMg01no188_b03.b1 CHROMAT_FILE:
MSMg01no188_b03.b1 PHD_FILE: MSMg01no188_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:35 2005
(328 letters)
>mm_chr11_103988520_103989247
Length = 728
Score = 538 bits (278), Expect = e-157
Identities = 318/346 (91%), Gaps = 23/346 (6%)
Strand = Plus / Plus
Query: 5 gaattctccttcactgtgtcactgccaagccccatccatagttgtctcatcgcaaggtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattctccttcactgtgtcactgccaagccccatccatagttgtctcatcgcaaggtct 241
Query: 65 cacttttctggaactgaaaacccctctaaagcacagtgcaactccctagaggaccaggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cacttttctggaactgaaaacccctctaaagcacagtgcaactccctagaggaccaggtt 301
Query: 125 caaaccatctttccatggggcgctggaaacatccaaggatgtgggactgcctgtgtccag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 302 caaaccatctttccatggggcgctggaaacatccaaggatgtgggactgcctgtgtctag 361
Query: 185 ccagctgtgtgagcatggatgtcaggcctccgagagact--------------------- 223
||| |||||||||||||||||||||||||||||||||||
Sbjct: 362 ccatctgtgtgagcatggatgtcaggcctccgagagactttccctctatagaaggttacc 421
Query: 224 --gacccctatcacaaagctgttgccaggattcaatgaggaacgtttgtggaaaagtgga 281
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 422 aagacccctatcacaaagctgttgccaggattcaatgaggaacgtttgtgggaaagtgga 481
Query: 282 gccctgaaagcagccttcccaaaggcatcgtcgtcagcacctgtag 327
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 482 gccctgaaagcagccttcccaaaggcatcatcgtcagcagctgtag 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_b03.g1 MSMg01no188_b03.g1 CHROMAT_FILE:
MSMg01no188_b03.g1 PHD_FILE: MSMg01no188_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:35 2005
(292 letters)
>mm_chr11_104114724_104115415
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Minus
Query: 1 actctatagaccaggctggcctcggattcacagagatccgcctgcctctgcctcccaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 actctatagaccaggctggcctcggattcacagagatccgcctgcctctgcctcccaagt 529
Query: 61 ggctgggattaaaggtgtgtacaagcatgcctggctgctcctcggctagtctcatcctat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 528 ggctgggattaaaggtgtgtacaagcatgcctggctgctcctcggctagtctcatcctgt 469
Query: 121 ggcttaactggaaggttctgtgtaaggcagtgaagtgttgaggctagctggcaggggcct 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 468 ggcttaactggaaggttctgtgtaaggcagtgaagtgttgaggatagctggcaggggcct 409
Query: 181 ggtgcaaccgcttccctgtttctgtgtgacataagatggttagggcagatcagaacctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggtgcaaccgcttccctgtttctgtgtgacataagatggttagggcagatcagaacctct 349
Query: 241 tcccaggcatgccactggcggggaggggtgtgtgtttaaaagaacagtcttt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcccaggcatgccactggcggggaggggtgtgtgtttaaaagaacagtcttt 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
