BAC Information

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BAC

Clone NameMSMg01-188H18
Chromosome11 (Build37)
Map Location 30,115,595 - 30,115,904
singlet/doubletsinglet
Overlap geneSpnb2
Upstream geneSmek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
Downstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188H18.T7 (MSMg01no188_h18.b1)MSMg01-188H18.TJ (MSMg01no188_h18.g1)
ACCAG379490AG379491
length743876
length of high quality
(start - end)
318 (45 - 362)49 (71 - 119)
definitionCHROMAT_FILE: MSMg01no188_h18.b1 PHD_FILE: MSMg01no188_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:09 2005CHROMAT_FILE: MSMg01no188_h18.g1 PHD_FILE: MSMg01no188_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCATTGAGTGGAGTGGGAAAGGGTCTGAGGAAGAAAACACTCA
TTGTCCACTTCAGAATCCTCGGGTTTGTTTCAGTGTGTACGTGCAATCAT
AATGTACACTGCAATTATTGCATAGTGCATTTTAAAGTCAAAGTCTCAAA
CACATCAAATTAACTGTTTGATAGGTATCACAAAAGTTAGAGAGCAGTTT
TCCCGAATGAAGCAATAGTTAGCAGCTCTGACTAGGAACGGATTATTTAG
TTTGCCAAATGCTCAACAACTACTCTGCATTCAGACTTACATGAGGTGCT
AAAGGAACGTTATTTTTTTTCCCCCCCCCCCCCATTGTCTCTAAGAACTG
ATTCATCAGCTAGAGACCCCCACATGAATAAAACTACTTTGAACAAATAC
TTGAGTCTAGAAATCCACAGGATACATAATACAGATTAACAGAGACCAAG
GAGATTGAATCAAAGAAAAGTTCAGCGTGAACTACACAGAAAAATGGCTC
TGCTTCATGGTAATAGGTTAAGACTGGATACATGAGAGAGCAGTGGTATT
TCCTATATAATTACTGGTTGATCCAACATGCAACATGCAGACCCAGGTAA
TGGACTAATACTTGATTAAGTTATCAATATCTCTCAAACTCCAGTCCATC
CAATTTTCATAAAACGCCTGTGCTGACAACATATTTTTCCCTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGATTCTCTTATTTGCCTTGGTGTAATGGGGG
TGGGGATCTGAGTTACTTTTTTCCTNCAAAGATGGGGGAAAATAGAAAAA
CATATTTTGGAGTTTGTGTTTTAAATATTGAATTGTAGTTTTTGCTTTGT
GGATTTTTTTTTGTTGTGGGATAAGTATTATTTTTTTTTATTATTTTTGT
GTTAATATAATGATTTTATAGTTAGTATATATGAACTAAACTAGGTGTTG
TTCCAAATATATTTTTTTTTTTTTTCCCGCTTTTTTTTTTTTTTTTTTGG
CTTACTCTGTTTAGAATAAAAGAGCATTTTTTTTTTTTTTCCCCCCCCCC
CCCCTCTTTTTTTATTTTTTTTATTTTTTTTTTTTATTATTTGTCGCCAC
CCACAAAAAAAAAAATAAATATATTTTTGGGGTGGGGTCTGTATTTTTTT
CGTTATCTATTTATATATTTTATCTTTTCTAGAATTTATGTCTTTAATTA
TATTTTTTGAATAGTTAAATTAGGGAGTGTCGATGTGTTTTATGGTTTTT
GTTGTATATTAATTTGTATTATCATTCTTTTATATATATGTTTTCTATAT
TATTTTTTCGCGCTTTTCACTTTTATATCCGCGTTATTTGTTTTCGAACT
ATCTTTTTTTAGCATATCATTATTATTTTTTTTCGGAGTATTTTTTATAA
ATAAAATTTTCTAGACTAATTCATGCTATTTTGTATTTTTTATTATAAGA
GCAGTATTGGCCGTCGTATGTAATTGTTATAGACTGAAATATATGTATTA
ACTGGATAACTTATTAGAGTTGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_h18.b1 MSMg01no188_h18.b1 CHROMAT_FILE:
MSMg01no188_h18.b1 PHD_FILE: MSMg01no188_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:09 2005
         (318 letters)



>mm_chr11_30115391_30116107
          Length = 717

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcattgagtggagtgggaaagggtctgaggaagaaaacactcattgtccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcattgagtggagtgggaaagggtctgaggaagaaaacactcattgtccac 264

                                                                       
Query: 65  ttcagaatcctcgggtttgtttcagtgtgtacgtgcaatcataatgtacactgcaattat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcagaatcctcgggtttgtttcagtgtgtacgtgcaatcataatgtacactgcaattat 324

                                                                       
Query: 125 tgcatagtgcattttaaagtcaaagtctcaaacacatcaaattaactgtttgataggtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcatagtgcattttaaagtcaaagtctcaaacacatcaaattaactgtttgataggtat 384

                                                                       
Query: 185 cacaaaagttagagagcagttttcccgaatgaagcaatagttagcagctctgactaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaaaagttagagagcagttttcccgaatgaagcaatagttagcagctctgactaggaa 444

                                                                       
Query: 245 cggattatttagtttgccaaatgctcaacaactactctgcattcagacttacatgaggtg 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 cggattatttagtttgccaaatgctcaacaactac-ctgcattcagacttacatgaggtg 503

                      
Query: 305 ctaaaggaacg 315
           |||||||||||
Sbjct: 504 ctaaaggaacg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)