BAC Information

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BAC

Clone NameMSMg01-189E01
Chromosome11 (Build37)
Map Location 48,389,552 - 48,389,924
singlet/doubletsinglet
Overlap geneLOC192895
Upstream geneLOC100039647
Downstream geneHn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189E01.T7 (MSMg01no189_e01.b1)MSMg01-189E01.TJ (MSMg01no189_e01.g1)
ACCAG380001AG380002
length727710
length of high quality
(start - end)
377 (62 - 438)290 (60 - 349)
definitionCHROMAT_FILE: MSMg01no189_e01.b1 PHD_FILE: MSMg01no189_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:11 2005CHROMAT_FILE: MSMg01no189_e01.g1 PHD_FILE: MSMg01no189_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGTTANNNNCCATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCTAAGTCCCAATCTTTTTTATAGTAGAA
ATGGCATCTCATGTGAGTATGGGTATGTGCCATGCCTGTGTATTTAATTC
ATGTTTATTTCCTTCCAATCTGTGACCCACTCCAAAAACTTCATATCCTC
AGACAGTTGTACCTGAGGTAGGTTATGTGAAGAATGTAGCCAAAATCTGT
GCGCATGCACCAAGTGCATGATGTGTGCTCAATGAATTTTAGCTGTTACT
AGTTTTGGTTATTTTATTTATTCACATTTAAAATTTTATTCCTCCTCCCA
GTTTCCCCTCCACAAGCCCCCTATCCCTTTTTTTACCCACCCACCCACCC
ACTCCTGCCTCAGTGACCTAGTGTTCCCCTTTCCTGGGTCAACAAAACTC
CATTGGACCAAGGGGCTTTTCCCCCAGTGATGCCAGATAAGGCAATCCTC
TGCTACGTATCCAGCTGGAGTCATGGGCACTCTTTGGTTGGTGATTTAGT
CTCTGAGAGCTTTGGGGAGGGGGTCTGGTTGGTTGAGATTGTTGTTCATT
CTATGACCGTGTCAAATTCTTTTCACCACATTCAACTGTTAAAGACCTAT
CTGCGACTTTCCCATTGAAGACTTGAATACCCCCCAAGTTTTGTTGGTTT
TTAACCCCATCCGCATGGGTTTTGGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCC
TCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
TTTTTTATATCCCCACCCACGCCCCAACTGGTAAGAAAGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATT
CACAAAGAAACTCACACAATATGTACTCACTGATAAATGGATATTAGCCC
CCAACCTAGGATACCCAAGATATAAGATATAATTTGCTTAAAACATGAAA
CTCAAGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_e01.b1 MSMg01no189_e01.b1 CHROMAT_FILE:
MSMg01no189_e01.b1 PHD_FILE: MSMg01no189_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
         (377 letters)



>mm_chr11_48389482_48390258
          Length = 777

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctaagtcccaatcttttttatagtagaaatggcatctcatgtgagtatgggta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattctctaagtcccaatcttttttatagtagaaatggcatctcatgtgagtatgggta 384

                                                                       
Query: 65  tgtgccatgcctgtgtatttaattcatgtttatttccttccaatctgtgacccactccaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgccatgcctgtgtatttaattcatgtttatttccttccaatctgtgacccactccaa 324

                                                                       
Query: 125 aaacttcatatcctcagacagttgtacctgaggtaggttatgtgaagaatgtagccaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacttcatatcctcagacagttgtacctgaggtaggttatgtgaagaatgtagccaaaa 264

                                                                       
Query: 185 tctgtgcgcatgcaccaagtgcatgatgtgtgctcaatgaattttagctgttactagttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgtgcgcatgcaccaagtgcatgatgtgtgctcaatgaattttagctgttactagttt 204

                                                                       
Query: 245 tggttattttatttattcacatttaaaattttattcctcctcccagtttcccctccacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tggttattttatttattcacatttaaaattttattcctcctcccagtttcccctccacaa 144

                                                                       
Query: 305 gccccctatccctttttttacccacccacccacccactcctgcctcagtgacctagtgtt 364
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gccccctatcccttcctttacccacccacccacccactcctgcctcagtgacctagtgtt 84

                        
Query: 365 cccctttcctggg 377
           |||||||||||||
Sbjct: 83  cccctttcctggg 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)