BAC Information

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BAC

Clone NameMSMg01-189G22
Chromosome11 (Build37)
Map Location 47,034,074 - 47,120,185
singlet/doubletdoublet
Overlap geneSgcd
Upstream geneCyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189G22.T7 (MSMg01no189_g22.b1)MSMg01-189G22.TJ (MSMg01no189_g22.g1)
ACCAG380120AG380121
length708762
length of high quality
(start - end)
321 (45 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no189_g22.b1 PHD_FILE: MSMg01no189_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:25 2005CHROMAT_FILE: MSMg01no189_g22.g1 PHD_FILE: MSMg01no189_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,119,873 - 47,120,185)(47,034,074 - 47,034,365)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTTGACTAGAACAGACTTTGTCCTGATTACTCCTTGTGCTTTTG
GTTTTGCCTGTGTAGTTTTAGACCCCCTGTACATCATTCACTGAGCGGCA
GCATGTGAGTGACTATTCTGGGTACATGCCAGGCAGGTGTGTGTGCACGT
GGTGAAAATAATCGAGGACCAAGCATGCATAGACAGCAAAGACTATTTAT
TCTGAGTCAGCCATAATTAGAAAGTGAGCCTTGCAGTCACCTATTACTTA
TGTTTCAGTGGAGACTCAAAGATAGGGAGAAGGAAATGTAATGATGAACG
AAAGGGAGCCATGACGCTAAATGCCNNAGCAANACCAAAGCTTCAGACTG
GCCAAAGCTCATTGCATGACTAGTTAAGGAAAGATATACCTATTTCTCTG
GTTGATCCTAAGTTGGATGCAGAGGCCTAAAAGCTGCCACTAGTTTATGG
GGAAATCTGCAGCAATAGAAGAAAGGTCATTTCAGTGCTGTTACAGTTTT
CAGATTGCCACAAGAGATAGCAATCTAGCAACTCTGGCTTCTTAGGTTGT
TCACTAGAGATGAAAGTGGTTTTCTGGATATATTGTTCTAACTTATAACA
GGGTCAAATGAAGCTGTTAGTGCGTTTGTGCGTGTTGGTGTGCTNTTCCN
NACCCTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAGGCAACATGACCTTTTAC
ACGGGGTGCTGTAGGTTTGGCCTCTGGAGGCAACACAGTCAGAGTATTCA
TGCCTAAAGACCTGTGAAGGTCAATTCTGAAATTCCTTAAAATGTGAGAT
AATAGACTTTGGAGATTCCTTACAGAAAACATCATCATAAACAACAACAA
CAACAATAGCGACAAACAAACACCACAGCCCAAACCCAATAGTGACATTC
CTATGGTAAATAAAGCACTAACACTAGTTTGAAAACAGACCCAATGCTAA
CAGAGGTGCCAGGACCTTATTTTATATCGCCCCTCCCCCCCGCTGCACTC
GCAGAGCACAGGCAAATCAAGGGAGGAGTTGTGTTTGCTGCAGGTAGCAG
AACTTGAAAGCCATTCGAGCTTGGATGAGTCCATGATGAGCCTCATATGC
TGAACATGGAGCAGCAGGACATGCTGTCTGCTCTGCCCTTCTGGGGTTTG
GTCTTGCCTTTGGTCTCATCATTTCCCAGGTTTCCATTTTGCCTTTCTGG
AATGAGAGTGTTTATTGTGCACCATTGTCTGTAAGGAGCATGAAATTACT
CTCAGAATTTATAGAAGCTTCCATTTAAAACATCTCTTTGGGTGACTGTT
GACCCTTGCACTCTGTATTTTCAAACGGTCCTATACTTGCACAGGTTCTA
TGACCAATTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_g22.b1 MSMg01no189_g22.b1 CHROMAT_FILE:
MSMg01no189_g22.b1 PHD_FILE: MSMg01no189_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:25 2005
         (321 letters)



>mm_chr11_47119829_47120549
          Length = 721

 Score =  551 bits (285), Expect = e-161
 Identities = 306/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttgactagaacagactttgtcctgattactccttgtgcttttggttttgcc 64
           |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 357 gaattcatctcgactaggacagactttgtcctgattactcctcgtgcttttggttttgcc 298

                                                                       
Query: 65  tgtgtagttttagaccccctgtacatcattcactgagcggcagcatgtgagtgactattc 124
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgtgtagttttagacttcctgtacatcattcactgagcggcagcatgtgagtgactattc 238

                                                                       
Query: 125 tgggtacatgccaggcaggtgtgtgtgcacgtggtgaaaataatcgaggaccaagcatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgggtacatgccaggcaggtgtgtgtgcacgtggtgaaaataatcgaggaccaagcatgc 178

                                                                       
Query: 185 atagacagcaaagactatttattctgagtcagccataattagaaagtgagccttgcagtc 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 177 atagacagcaaagactatttattctgagtcggccataattagaaagtgagccttgcagtc 118

                                                                       
Query: 245 acctattacttatgtttcagtggagactcaaagatagggagaaggaaatgtaatgatgaa 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 acctattacttatgtttcagtggagactcaaagacagggagaaggaaatgtaatgatgaa 58

                        
Query: 305 cgaaagggagcca 317
           |||||||||||||
Sbjct: 57  cgaaagggagcca 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_g22.g1 MSMg01no189_g22.g1 CHROMAT_FILE:
MSMg01no189_g22.g1 PHD_FILE: MSMg01no189_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:25 2005
         (292 letters)



>mm_chr11_47033874_47034565
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaaggcaacatgaccttttacacggggtgctgtaggtttggcctctggaggcaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaaggcaacatgaccttttacacggggtgctgtaggtttggcctctggaggcaacac 260

                                                                       
Query: 61  agtcagagtattcatgcctaaagacctgtgaaggtcaattctgaaattccttaaaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcagagtattcatgcctaaagacctgtgaaggtcaattctgaaattccttaaaatgtg 320

                                                                       
Query: 121 agataatagactttggagattccttacagaaaacatcatcataaacaacaacaacaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agataatagactttggagattccttacagaaaacatcatcataaacaacaacaacaacaa 380

                                                                       
Query: 181 tagcgacaaacaaacaccacagcccaaacccaatagtgacattcctatggtaaataaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcgacaaacaaacaccacagcccaaacccaatagtgacattcctatggtaaataaagc 440

                                                               
Query: 241 actaacactagtttgaaaacagacccaatgctaacagaggtgccaggacctt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaacactagtttgaaaacagacccaatgctaacagaggtgccaggacctt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)