BAC Information

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BAC

Clone NameMSMg01-189J12
Chromosome11 (Build37)
Map Location 78,043,589 - 78,102,694
singlet/doubletdoublet
Overlap geneSupt6h, Sdf2, 2610507B11Rik
Upstream geneSsh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik
Downstream geneBC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189J12.T7 (MSMg01no189_j12.b1)MSMg01-189J12.TJ (MSMg01no189_j12.g1)
ACCAG380226AG380227
length739746
length of high quality
(start - end)
311 (46 - 356)159 (463 - 621)
definitionCHROMAT_FILE: MSMg01no189_j12.b1 PHD_FILE: MSMg01no189_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:36 2005CHROMAT_FILE: MSMg01no189_j12.g1 PHD_FILE: MSMg01no189_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,102,388 - 78,102,694)(78,043,589 - 78,043,747)
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCCCATTCTGGTGATGGGGCTGACTCCTGCAGAAAGCAGGACA
GGTTTGTCACCCATGGCCCACTTTCACAGGAAGCCCAACTGTCACCCTGT
CTATAATCTTTAGTCCCCTTCCTACTCTAAGTGCTGGGATGGAATATACC
TTATAACTGACACACAGTGGAACTTGTGGGATTTTTATATATATGAAGGA
GTTGTTCATGGCAGCTCGCTCTTTCATCTTGTCAATATCATCAACTGGGT
GCTGGGAAAGACAGAAAAGGAGCATAAGCCCTAAAACCACGAGAGCAACC
CAAGATGCTTTATTACTCCCCCCTCCGTCCTGGAGAAGACTTAAGACCAA
AGGAACAACACCCACCCAGGTCCACATAAACTATTAATACCCATTTAATA
AATCTAAACATACTAAAATGTTTTTACCTTTTTGTTTCTTTTGCTTTTTG
TCGTTTTGTTTTGGTAGCAACAGGGTTTCTTTGTATATCATCCCTGGCCT
GCCTCTGCTTCCCAAGTGCTGAGATTAAAGGTGTGCGCCCCCATGCTAGG
CTTCTTTTGCCTTTTTTGAGACAGGATCTCATACAGTCCAAGCTGCCCTT
GGACTTATCTTCCAGCTCCTGTCCTCAAGTGTTGAAATTATAGTGGACCA
CCACTTTTATTCTCCCTTGATTTCATATGCTTTACCTCA
CGGGGNCCGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACG
ACGAGGAGGNNGAACNANAGAAGTATCCAAAAAGAACGGGNNNNGNNNNG
NNNNGNNNNNGCAAGCNAGNNAGNNTGTTTTCTCCAAAAAAAGAAAATAC
ACTGTTGCTGTCTTCAGACACCTGAGAAGAGGGCATCAGATCTCATTACA
GATGGTNTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTT
TGGAAGAGCAGTCAGTGCTCTTATCCTCTGGGCCATCTCACCAGCCCTAG
AATTCTTTTTAACGTTTATTTACATGTACAGATTTTTTGTCTGCATGNAT
ACCTGTGTACCAAGGGAGTGTTTTTTTTCCCCACCCGCCCCCAAGAGGGA
GNAGGACCCTTAGAACTACGGNTACAGGAAGATAGAGNNCAACCAAGAGG
GTGCGGGGAAGTAAACCCCAGTTCTCTGCAAGGGCAACAAGCGCTCCTAA
CCACCGGCTTTGCAGCTTCTCAAGTTCAAGCTTGTGAGTACCTGGAGGGA
GATGGTCGGTGTTGCGAAGGCATTTCTATAGATCCAGTCAGCTTCCTCTT
CTAGCTCATCATCCTCAGCTGCCTTGACTGGGATGGAGCGGAGTTGTAAT
GCGTTAAGAGGGTGAGATAATTTTATGTTATATTCTGCTTAAGAAAAAAA
CATAAACCACTACCACACAGTAGCATGCGAGGCCCAGGGATGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_j12.b1 MSMg01no189_j12.b1 CHROMAT_FILE:
MSMg01no189_j12.b1 PHD_FILE: MSMg01no189_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:36 2005
         (311 letters)



>mm_chr11_78102184_78102894
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctcccattctggtgatggggctgactcctgcagaaagcaggacaggtttgtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattccctcccattctggtgatggggctgactcctgcagaaagcaggacaggtttgtca 452

                                                                       
Query: 65  cccatggcccactttcacaggaagcccaactgtcaccctgtctataatctttagtcccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cccatggcccactttcacaggaagcccaactgtcaccctgtctataatctttagtcccct 392

                                                                       
Query: 125 tcctactctaagtgctgggatggaatataccttataactgacacacagtggaacttgtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcctactctaagtgctgggatggaatataccttataactgacacacagtggaacttgtgg 332

                                                                       
Query: 185 gatttttatatatatgaaggagttgttcatggcagctcgctctttcatcttgtcaatatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gatttttatatatatgaaggagttgttcatggcagctcgctctttcatcttgtcaatatc 272

                                                                       
Query: 245 atcaactgggtgctgggaaagacagaaaaggagcataagccctaaaaccacgagagcaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 271 atcaactgggtgctgggaaagacagaaaaggagcataagccctaaaaccaccagagcaac 212

                  
Query: 305 ccaagat 311
           |||||||
Sbjct: 211 ccaagat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no189_j12.g1 MSMg01no189_j12.g1 CHROMAT_FILE:
MSMg01no189_j12.g1 PHD_FILE: MSMg01no189_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:36 2005
         (159 letters)



>mm_chr11_78043389_78043947
          Length = 559

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccccagttctctgcaagggcaacaagcgctcctaaccaccggctttgcagcttctca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccccagttctctgcaagggcaataagcgctcctaaccaccggctttgcagcttctca 260

                                                                       
Query: 61  agttcaagcttgtgagtacctggagggagatggtcggtgttgcgaaggcatttctataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcaagcttgtgagtacctggagggagatggtcggtgttgcgaaggcatttctataga 320

                                                  
Query: 121 tccagtcagcttcctcttctagctcatcatcctcagctg 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagtcagcttcctcttctagctcatcatcctcagctg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)