Query= MSMg01no189_l19.b1 MSMg01no189_l19.b1 CHROMAT_FILE:
MSMg01no189_l19.b1 PHD_FILE: MSMg01no189_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:47 2005
(260 letters)
>mm_chr11_90937083_90937741
Length = 659
Score = 484 bits (250), Expect = e-141
Identities = 256/258 (99%), Gaps = 1/258 (0%)
Strand = Plus / Minus
Query: 3 gatgagatagcttgtgatagaacagaacaatatcccaattacaaatgaggggaaacatgc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gatgagatagcttgtgatagaacagaacaatatcccaattacaaatgaggggaaacatgc 400
Query: 63 acatctgtatgaaggccccagagacctgctgaagtcatcaggatgagatagtagaatata 122
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acatctgtatgaaggcccc-gggacctgctgaagtcatcaggatgagatagtagaatata 341
Query: 123 gagcaggaaaccgcaatggaactaaggaatgtggttagctgcttctctacataagccatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gagcaggaaaccgcaatggaactaaggaatgtggttagctgcttctctacataagccatt 281
Query: 183 tgctcatgaggatggaacagcaagcaaagctttggggagaatgggtaggatgaccaatgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgctcatgaggatggaacagcaagcaaagctttggggagaatgggtaggatgaccaatgg 221
Query: 243 gggaggggaactagcaga 260
||||||||||||||||||
Sbjct: 220 gggaggggaactagcaga 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 659
Length adjustment: 9
Effective length of query: 251
Effective length of database: 650
Effective search space: 163150
Effective search space used: 163150
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no189_l19.g1 MSMg01no189_l19.g1 CHROMAT_FILE:
MSMg01no189_l19.g1 PHD_FILE: MSMg01no189_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:47 2005
(569 letters)
>mm_chr11_90888886_90889853
Length = 968
Score = 1069 bits (553), Expect = 0.0
Identities = 565/569 (99%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 1 ccctgtactggggcatataaagtttgcgtgtccaatgggcctctctttcccgtgatggcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccctgtactggggcatataaagtttgcgtgtccaatgggcctctctttccagtgatggcc 260
Query: 61 gactaggccatctttagtttaaagttttgtctctttattccattggattttggtcactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactaggccatctttagtttaaagttttgtctctttattccattggattttggtcactct 320
Query: 121 ttgcatggtatgtccttttctatctctgccttctacaaatttgtgtgattaaattaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcatggtatgtccttttctatctctgccttctacaaatttgtgtgattaaattaaaaa 380
Query: 181 taaatctcttttaggcaattgggtcatggcttttgaaaactcatttgtccagtctttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatctcttttaggcaattgggtcatggcttttgaaaactcatttgtccagtctttgcc 440
Query: 241 tttcagtggttaaatttgttggattacatttaatgtaatcattgataagaaagtctgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tttcagtggttaaatttgttggattacatttaatgtaatcattgataagaaagcctgtct 500
Query: 301 gtaactttgaaatgtacttttatatatcattctgttctgtgctttccctattatccactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaactttgaaatgtacttttatatatcattctgttctgtgctttccctattatccactt 560
Query: 361 ctttcatattaatgcattctttatactgtaccactttgattcactctcattttttttggt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ctttcatattaatgcattctttatactgtaccactttgattcactctcattttttt-ggt 619
Query: 421 atcgatatttaaaatgattccttagtgggaatttatatttaatactttcaatgtaaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atcgatatttaaaatgattccttagtgggaatttatatttaatactttcaatgtaaaagt 679
Query: 481 attgatttttcattgataccagtatggctttaacagttgtgaaatttctgccacaccatg 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 attgatttttcattgataccagtatggctttaacagttgtaaaatttctgccacaccatg 739
Query: 541 ttcataaagtaaatttttcttttaaataa 569
|||||||||||||||||||||||||||||
Sbjct: 740 ttcataaagtaaatttttcttttaaataa 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
