Query= MSMg01no189_m13.b1 MSMg01no189_m13.b1 CHROMAT_FILE:
MSMg01no189_m13.b1 PHD_FILE: MSMg01no189_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:51 2005
(316 letters)
>mm_chr11_112102849_112103565
Length = 717
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctcacactctgttgcaagaaagggtgtgatacaactgtcatcgtttaattat 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 517 ggaattctctcacactctgttgcaagaaagtgtgtgatacaactgtcatcgtttaattat 458
Query: 64 gaaaacagtcactccaataaacgccatttgtccatt-aaaaatatgttaactcttctggt 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 457 gaaaacagtcactccaataaacgccatttgtccattaaaaaatatgttaactcttctggt 398
Query: 123 aaatatagtttgtgtttctgcatgttccttatgtacatatggttgattagaacaacattt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaatatagtttgtgtttctgcatgttccttatgtacatatggttgattagaacaacattt 338
Query: 183 aagctctctaaccccattggctctcagtcttgcaatgacgtagtcctatttaattatctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagctctctaaccccattggctctcagtcttgcaatgacgtagtcctatttaattatctt 278
Query: 243 ttactggggaaaatacacagcttacacttgttttgtttaaacatcttttcacaacaaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttactggggaaaatacacagcttacacttgttttgtttaaacatcttttcacaacaaatt 218
Query: 303 tcatttataggttg 316
||||||||||||||
Sbjct: 217 tcatttataggttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_m13.g1 MSMg01no189_m13.g1 CHROMAT_FILE:
MSMg01no189_m13.g1 PHD_FILE: MSMg01no189_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:51 2005
(292 letters)
>mm_chr11_112076725_112077416
Length = 692
Score = 451 bits (233), Expect = e-131
Identities = 265/289 (91%), Gaps = 22/289 (7%)
Strand = Plus / Plus
Query: 1 agtacatatgttgtggcatatgtgcacctgtatacacacacacacacacacacacacaca 60
||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 223 agtacatatgttgtggcatatgtgcacctgt------------acacacacacatacaca 270
Query: 61 cacacacacacacacacacacacacagagagagagagagagagagagagagagagagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacacacacacacacacacacacacagagagagagagagagagagagaga---------- 320
Query: 121 gagacaaaagagagaaacaccaaaagtatttgtatacttatctttctttatctatatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacaaaagagagaaacaccaaaagtatttgtatacttatctttctttatctatatctg 380
Query: 181 tctacatatgtaaatccctctctatatacatatataaataaatagaaataaacttgtatt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctacatatgtatatccctctctatatacatatataaataaatagaaataaacttgtatt 440
Query: 241 attcaacatgaacctaagtttctgaccagtcatgttctgaaacgaatta 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaacatgaacctaagtttctgaccagtcatgttctgaaacgaatta 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
