Query= MSMg01no190_l21.b1 MSMg01no190_l21.b1 CHROMAT_FILE:
MSMg01no190_l21.b1 PHD_FILE: MSMg01no190_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:07 2005
(381 letters)
>mm_chr11_107237778_107238558
Length = 781
Score = 667 bits (345), Expect = 0.0
Identities = 369/381 (96%), Gaps = 8/381 (2%)
Strand = Plus / Plus
Query: 5 gaattctctggcaaccagaaagagctcccagatccatggtattaatggtgggacgtgaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggcaaccagaaagagctcccagatccatggtattaatggtgggacgtgaca 264
Query: 65 aaaacaagcccttcctagagccattcacactcctcagaaaggatcacaggaggaacaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaacaagcccttcctagagccattcacactcctcagaaaggatcacaggaggaacaaac 324
Query: 125 aaataacgtctgaagaggccagggagaaaagctgatttgacctaaggtggaatggcttgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaataacgtctgaagaggccagggagaaaagctgatttgacctaaggtggaatggcttgg 384
Query: 185 aggtgatagttttcatggtgtgttccactggaaccagaccctggccggcgggctccgtaa 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 aggtgatagttttcatggtgtgttccattggaaccagaccctggccggcgggctccgtaa 444
Query: 245 cagtccccctggcatgatggtcctgttttcttaatacttctagatctttcttccctgccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtccccctggcatgatggtcctgttttcttaatacttctagatctttcttccctgccc 504
Query: 305 ttttatttgctgattttt----acttcccccccccctgcttctggggctccagacattgc 360
|||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 505 ttttatttgctgat----cagaacttcccccacggctgcttctggggctccagacattgc 560
Query: 361 taggtgtgccctgtgggaaga 381
|||||||||||||||||||||
Sbjct: 561 taggtgtgccctgtgggaaga 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_l21.g1 MSMg01no190_l21.g1 CHROMAT_FILE:
MSMg01no190_l21.g1 PHD_FILE: MSMg01no190_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:07 2005
(261 letters)
>mm_chr11_107359214_107359872
Length = 659
Score = 470 bits (243), Expect = e-137
Identities = 256/261 (98%), Gaps = 2/261 (0%)
Strand = Plus / Minus
Query: 1 aggacctctggaagagtagtcagtgctcttaaccgctgagccatctctccagtccctttt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 463 aggacctctggaagagtagtcagtgctcttaatcgctgagccatctctccagtccctttt 404
Query: 61 cagtcatttttaaagtatagtaatgcaatgtgagagaaagaacgcacagagtccacgaga 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 403 cagtcatttttaaagtatagtaatgcaatgtgagagaaagaacg--cagagtccatgaga 346
Query: 121 gcattccaaatgcactcaggccagagccttcctgtcagtgtcaaaacacaaagcaaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gcattccaaatgcactcaggccagagccttcctgtcagtgtcaaaacacaaagcaaactc 286
Query: 181 cacgcacaagatccttgcatggtctatggttttttttttttttttttttttgggttttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 285 cacgcacaagatccttgcatggtctatggttttttttttttttttttttttggtttttta 226
Query: 241 tttttggtttttttattctat 261
|||||||||||||||||||||
Sbjct: 225 tttttggtttttttattctat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 659
Length adjustment: 9
Effective length of query: 252
Effective length of database: 650
Effective search space: 163800
Effective search space used: 163800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
