BAC Information

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BAC

Clone NameMSMg01-191B18
Chromosome11 (Build37)
Map Location 78,023,769 - 78,024,072
singlet/doubletsinglet
Overlap geneSupt6h
Upstream geneSsh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik
Downstream geneSdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B18.T7 (MSMg01no191_b18.b1)MSMg01-191B18.TJ (MSMg01no191_b18.g1)
ACCAG381237AG381238
length733739
length of high quality
(start - end)
310 (45 - 354)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no191_b18.b1 PHD_FILE: MSMg01no191_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:35 2005CHROMAT_FILE: MSMg01no191_b18.g1 PHD_FILE: MSMg01no191_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAGTACTCTAGAAGGTGCTTAATCTGCTTTCATTCAGTGTTTCT
GAGAGTAACAGAGTGGATAAAGAGGATGGGCCTTAGCTTCATACCTGGAT
CTGGTCTAGTCTGAGTTCTGCACTTACCACCTATGTGACTGCACCAAGCA
CTACAGCCCATAAGCCCAAAGGAGTCACAAGGAATGACGAGGCAAGTATA
CAAGGCAATCAATCTAGCTAACAGAGAGCTATGTTCTCTCGAGGAAGCCA
ACAACAGCTCTCAAGACAATGGTAAGCATGGTGTAATCCTCACTTATACG
CAGTCCTTTTTTGCTCCCCACCCCTCCACACAAAGATACAGGTCAGGGAG
TCTGTGGGATTCTATGGGAAGACACGATGTTGAATCTTACTTCAGGTCGT
CACCTCAGCTGGCCTTCATCAAACATTTCCAGTCTTACAGGGCCCTGGCT
GCCACTCTGTGGGAGGCACTGATATGACGGGAAAGCCACCTTAGAAAAGA
GCATGATAGTCTCGATGCCAAGTGTGGCACAAGGCCCCAGAGTTGCACAT
GTGACCAGTACAGAGCTAGAACACAGATGTGTATCTCTCCACGAGTGGAG
AATGGCTAGTGGCAGGTCAGGTCAGGTCAGGTCAGGTCAGGTCAGGTCAG
GTCAGGTCTAGTCAAGACAGCAAGTATGACTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCAGCCTGGGGCAAAGCAAG
TTCCAGGTCCAGGCGTGGTGGTACACACCTTTAATCTGGGCCACGTTGTC
TGCTGGAGGCCTAAATAAGGACAATGGAAGAAGGGAAAGGCTTTGCAGCT
TTACACTCACTTGCCAGGACATCTGGACCCTACTTACTTCTTCAGGATTC
CAGCTTAGACAGAAGACCAGCTGAAACAACTAGCCTGGTGGGACTGAGCA
ACTGCTAGATATTGGGACTTCCCATTCACAGCTGCCCATTGTTGGGTTAG
TTGGACTTTTATATTGTACCCCACCCCCCCAAATTCCCTTTAAATATATA
AAGACATTCCATAAGTTCTGTGACACAAAAGAACCCTGACTAATACATGG
TCCATCAAAAAGACCCAGCAAATAAATAGTGGATAGTGTCGGAAAAGTCC
AGGCAGGTAAATAAAGGTTAGCAAAAGTTTGTATCACACAAACAATGTGT
GTGGAATGCTTAGGCCTTGTGGTAGTTGGCATGTGAGATTCCAGCTGTGC
TCATACAAAGACAGTAGTGTGCTACTAGTAACAAATATGAATAGGGAGGA
TGAGATAGGATGGAAAATACTGTAACACCTTGGTCAAAAAATAAATGCAA
AGATGAATTAAAGATAGACCAATTCTATCCTCAGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b18.b1 MSMg01no191_b18.b1 CHROMAT_FILE:
MSMg01no191_b18.b1 PHD_FILE: MSMg01no191_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:35 2005
         (310 letters)



>mm_chr11_78023564_78024273
          Length = 710

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%), Gaps = 1/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagtactctagaaggtgcttaatctgctttcattcagtgtttctgagagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctagtactctagaaggtgcttaatctgctttcattcagtgtttctgagagtaa 265

                                                                       
Query: 65  cagagtggataaagaggatgggccttagcttcatacctggatctggtctagtctgagttc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagagtggataa-gaggatgggccttagcttcatacctggatctggtctagtctgagttc 324

                                                                       
Query: 125 tgcacttaccacctatgtgactgcaccaagcactacagcccataagcccaaaggagtcac 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtacttaccacctatgtgactgcaccaagcactacagcccataagcccaaaggagtcac 384

                                                                       
Query: 185 aaggaatgacgaggcaagtatacaaggcaatcaatctagctaacagagagctatgttctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaatgacgaggcaagtatacaaggcaatcaatctagctaacagagagctatgttctc 444

                                                                       
Query: 245 tcgaggaagccaacaacagctctcaagacaatggtaagcatggtgtaatcctcacttata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcgaggaagccaacaacagctctcaagacaatggtaagcatggtgtaatcctcacttata 504

                
Query: 305 cgcag 309
           |||||
Sbjct: 505 cgcag 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)