BAC Information

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BAC

Clone NameMSMg01-191M15
Chromosome11 (Build37)
Map Location 54,458,353 - 54,458,619
singlet/doubletsinglet
Overlap geneRapgef6
Upstream geneLOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191M15.T7 (MSMg01no191_m15.b1)MSMg01-191M15.TJ (MSMg01no191_m15.g1)
ACCAG381677AG381678
length956704
length of high quality
(start - end)
---280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no191_m15.b1 PHD_FILE: MSMg01no191_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:32 2005CHROMAT_FILE: MSMg01no191_m15.g1 PHD_FILE: MSMg01no191_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACATAAGAGAAAAAATNNGGGGGGNNGGGGGNNGGGGNNGANNAGGA
ACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAAAACCGCG
GAANNAAGAGNNCCTTCCCCCAAAAAAAAANAAAAGGGCAGANGAANGAC
GGACCAGGGAAGGGGAAGAGAGAATTTTTTCCCCTCAGAAAGGAGGGAGA
TAATAGATTTGTGGAGAAATTTGATGTGATAGAAGAAAGGAGCGATGGTT
GTGAGTGAGATGGAAAGGAAAGAAAATGGAGAGGAAAGAAAGGAGAGGGG
GGGGGAGAGTGAGAGGAAAGGAAAGGAAAGTTTTTTTTGAGAGGGGAGAG
GAGGAGGGAAAAAGAAGAGGGGAGAAGAAAAAGAAAAAAGGAAAAAGAAG
AAAAAAAATTTGTTCTTTTTGGGAAAAAAGAAAAAAAAAAAAAAAAAAAA
AAATTAAGGGTGGGCCCNGAGAGGCGGGGGGGCCNNNNNNNGNGGNGNNG
GGNNGNNGNGNNGGGGGGGGGGGGGNNGNGAAAAAAANNNNAAAANNNNN
NAAAGGGGNNNNNGGGNNNNNNGGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGNNNNNNNNGGGNGGNGGGGGGNNGNNNNNNGGGGGNGGGGGGGG
NGGGGGGGGGGGGNGGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGNGGGG
GGGGGGGGGNNGGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGNGGGGNGG
GGGGGGGGGGGGGGGGNGGGGGGGGGNNGGGGGNNGNGGGGGGGNNGGNN
GGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNGNNGGGGN
GGGGTGTTTTTTTTTTGTGGGGGAGNNGGGNNGGGGTGTGGGGTGGGGGG
GGGTGAATNGGGGGGTGTGTGGTTGTGGTGGGTGGGGGGGNNGGGGGGGA
GTNGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCAGCTGCAACTACTTAGGA
AGACCCTGTTTCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAAGA
ACTAGTGATCTGGTTCAATGGCAGATTACTTGCCTTACATGGGGAAGACC
CCCCAAAAACTGCAAGAAAAACTTATCCAAATTCATTTAAAATGGTGTCA
AAATAATACATTCTCAAAAATACTGAGCAGCTAGTTTAACAGATAAAAAT
GAAAAACTAATTCTCACAAACTGGCCTCAAAAATCTGTAGGAATCTTATC
TTTTAGGTTTTTATTGACTCCACCCCCCGACATATTCTACTGCATACATA
CAAAAGAGGTGTAGCACAAAGCAAAAAACTCAACTTAGAGGGGGTTCGGT
AAAAATACATCCTGAATTTAAACAAACCCATTTCTAGTAGATCTTTTTTC
CTTGGTACCAATTCAAAATTATCATATGGGAAATACTCAACTGGCTGCTC
CTGGAGACAGCAATTTCTGTTTCCTGCTATGAACCTAGTGTCCATGCCTA
GTAACCTACTTCCACTCTCCAAAGAATATGCATAATGCCATTGGTTTAGC
TGATCAGAAAGGGTCTATAATGAGCCACAATTGTAACATTCTCTAGTTTT
AGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_m15.g1 MSMg01no191_m15.g1 CHROMAT_FILE:
MSMg01no191_m15.g1 PHD_FILE: MSMg01no191_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:32 2005
         (280 letters)



>mm_chr11_54458086_54458765
          Length = 680

 Score =  464 bits (240), Expect = e-135
 Identities = 264/280 (94%), Gaps = 13/280 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgccagctgcaactacttaggaagaccctgtttcanaaaaaaaaaaaaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||             |||||||||||
Sbjct: 534 aatgccagctgcaactacttaggaagaccctgtttc-------------aaaaaaaaaaa 488

                                                                       
Query: 61  aaaaaaagccaagaactagtgatctggttcaatggcagattacttgccttacatggggaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaaaaaagccaagaactagtaatctggttcaatggcagattacttgccttacatggggaa 428

                                                                       
Query: 121 gaccccccaaaaactgcaagaaaaacttatccaaattcatttaaaatggtgtcaaaataa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaccccccaagaactgcaagaaaaacttatccaaattcatttaaaatggtgtcaaaataa 368

                                                                       
Query: 181 tacattctcaaaaatactgagcagctagtttaacagataaaaatgaaaaactaattctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tacattctcaaaaatactgagcagctagtttaacagataaaaatgaaaaactaattctca 308

                                                   
Query: 241 caaactggcctcaaaaatctgtaggaatcttatcttttag 280
           ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 caaactggcctcagaaatctgtaggaatcttatcttttag 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)