BAC Information

Click to search

BAC

Clone NameMSMg01-193E10
Chromosome11 (Build37)
Map Location 4,088,698 - 4,088,885
singlet/doubletsinglet
Overlap geneTbc1d10a
Upstream geneSfi1, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
Downstream gene2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193E10.T7 (MSMg01no193_e10.b1)MSMg01-193E10.TJ (MSMg01no193_e10.g1)
ACCAG382647AG382648
length737834
length of high quality
(start - end)
188 (128 - 315)---
definitionCHROMAT_FILE: MSMg01no193_e10.b1 PHD_FILE: MSMg01no193_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:36 2005CHROMAT_FILE: MSMg01no193_e10.g1 PHD_FILE: MSMg01no193_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCGGTTTTATCTCGTGGGGTCTTGGACGTAACAGTCACGTTTGCT
GGTAAATTCTAAAGCATGTTTAACCTTCTGTGGTTATTGGATTTTTACCC
AGATTTCAGGGTGCAGGGCGATATGATAGAGTGAGGAAGGGCCAGATTTA
GGGATCCTACCTGCTGGCTGTGTGACCTTGGGTAGATCTTGAGTCCCTAG
CCTGTTTAGTCAAAGGAGAAAGTAGTGTGTATACCCATTGCTGCTGAGGA
ACATGAAACCGGATATATGTATTTTTTCCGCACCATGCCTGGCACAGGAA
TAGCCCATGATTTCTTTTTTCCCCCTCCTCCCCCGGGTCTGAGAAATGAA
GAGAAAAATTATTGCGTACCCCCGCTATTAGAGAAAAGAGACGCCTGTCG
GGAGCACCTCCCTTTGGCTCTCATCCCAAAATCTCTTTCTGCTGTTCATC
TTCTCCACCTTCCAACAGCTCACTTAGGATACGACCCCCTAGGTGCTCTT
CCTTGCCTCTGACGCTTGTTAGTCCTTGCCTGATTTTAGATCTTTATATC
CGTTTTTGTCTCCCTGCCTCGCTTTCCTTCCCTCTGCTTTTTACCCAATT
CCTCTGGTTCCCTACCCCTTTGCATTCTCCTTTTTTTTTCCTTCTCCCGC
TGCTTTGTTTATTTGTCTCCCCCGTCTTTCCCCTGCC
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCATGGATAGTATGAAAGGAGG
GTGAGAACAGAGTGGGGGATTTTCCCACAGAAGGATGTTTCGATTTTNTT
TTTNTTTTTTTTTTTTTTTTTTTTNTTTCTATTTTTTTTTTTTTTTTTTN
TTNTNNTTTTTTTTCTTTTTTTTTTTTTTTNNCTTTTTGGGTGGTTTTTC
CCTTNTTTNTTTTNTCCCTTCCTCTCCTCTTCTTTCTTCTTCCCTTTCCC
CTTTCTTCTCCTCTCTTCCCCCCTCCTCTTTTTTTTTTTCCCCTTCCCCC
CCTCCTTTCTTCCCTCTCTTTTTATTAATTCCCAAAACATTAACCCCCTT
TTAAATTTTGTTTTTTTTTTTTGGTTGTTTTCCCCCCCCCTCTTACACAA
CTTTTCTCTTTTTCTTTTTCTCCCTCCTTTTTCCTCCTCTCCCCTTTCTT
TTTCCCCCTCTTTTTTCCCCCCTCCTTCCTTTTTTTTCTTCCCCTCTCTT
TTTTTTTTTCCCCCCTCCCCTTTTCCTTCTTTTTTCTCTCTCTTTTCCTC
TTTCCCTCCCCCCCTCTTTCTTTTCCCTTTCTTTTTTCCCCTTTCCCTTT
TTCTTCTCCTTTCTCCCCCCCTTTTCTTTTTCCTCCCTCTTTTCCCCCTC
TTTTCTTCTATCTTCTTTTCTCCCTCCCTTCCCCTTTTTCCTCCCGCCTT
TTCCTTTTTTTTTTTTTCCCCCTTTTTCTTCCCCTTTTCCCCCCCCCTCC
TTTTCCTCTTCCCTCTCTTTCTTCTCCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_e10.b1 MSMg01no193_e10.b1 CHROMAT_FILE:
MSMg01no193_e10.b1 PHD_FILE: MSMg01no193_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:36 2005
         (188 letters)



>mm_chr11_4088498_4089085
          Length = 588

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtggttattggatttttacccagatttcagggtgcagggcgatatgatagagtgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtggttattggatttttacccagatttcagggtgcagggcgatatgatagagtgagga 260

                                                                       
Query: 61  agggccagatttagggatcctacctgctggctgtgtgaccttgggtagatcttgagtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggccagatttagggatcctacctgctggctgtgtgaccttgggtagatcttgagtccc 320

                                                                       
Query: 121 tagcctgtttagtcaaaggagaaagtagtgtgtatacccattgctgctgaggaacatgaa 180
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcctgtttagtcaagggaaaaagtagtgtgtatacccattgctgctgaggaacatgaa 380

                   
Query: 181 accggata 188
           ||||||||
Sbjct: 381 accggata 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)