BAC Information

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BAC

Clone NameMSMg01-193G21
Chromosome11 (Build37)
Map Location 10,649,648 - 10,650,022
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193G21.T7 (MSMg01no193_g21.b1)MSMg01-193G21.TJ (MSMg01no193_g21.g1)
ACCAG382739AG382740
length1,2521,179
length of high quality
(start - end)
424 (31 - 454)377 (72 - 448)
definitionCHROMAT_FILE: MSMg01no193_g21.b1 PHD_FILE: MSMg01no193_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:51 2005CHROMAT_FILE: MSMg01no193_g21.g1 PHD_FILE: MSMg01no193_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGAAGCACTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCAACACCACACCCTCATCAATGGACAGATCATGGAAACAGAAACTAAAA
AGAGATACAGTGAAACTAACAGAAGTAATGAACCAAATGTATTTAACAGA
TATCTATAGAACATTTCATCCTAAAATAAAGGAAAATACCTTTTTTTCAG
CATGTCATGGTATCTTCTTCAAAATTGGCCATATAATTGGTCACAAACAG
GCCTCAACAGATTCAAGAAGACTGAAATAATACCATGAATCCTATCAGAT
CACCAAAGACTAAGGCTGGTCTTCAATAACAAGAAGATCAACAGAAAGCC
CACATACAAATGGAAGCTGAAAGATGATCTGCTCAATGATAACTTGGTCA
AGGAAGAAATAAATGACAAAATTAAAGACATTTTAGAATTTACTGACAGT
GAATTTTTAACTCACCCAACGTATGGGACACAAAGAAAGCTGTGATAAGA
GGGAAACTCATAGCTCTTTAGTGCCTCCAAAAAGAAACTGGAGAGCACAC
ACTAGCTGCTTGACAGCATATCTGAAATCTCTAGAACAAAAAGAAGCAAA
TACACCCAAGAGGAATAGATGGCAGGAAATAATTGAACTCAGGGCTGAAA
TCAACCAGGTAGAAATATAAAGAACTATAAAAAGAATGAACAAAACCAGG
AGCTGGTTCCTTGAGAAAATCAACAAGATAGATAAACCTTTAGGCAGACA
AAACAGAAGGCATGGAGACAGTACCCAAATTATGAAAATCAGAACTAANA
AGGGAGACAGAATCCGAGGAAATGCAACAACATCAACAATGAAAAAATCA
TAAGATGCTACTACAAAAGCTGGAAAATCTGGATGAAATGGGCAATTTTC
TATACAGATACCAAGTATCAAAGTTAAATCAGGATTAGATAAACCATCTA
AACATTCCATAACCTCTAAAGAAATTAGAAGTATTCATTAATAGTCTCCC
CAACCAAAAAAGTCCAGGTGGGGTTTCAGGCAAAATTTCTATCACACCCT
TCAAAGTTCTAATAACAACACTCCTTTAAAATATTTCCCCAAAATAAAAA
AAACACTATTGCAATTCTTTCTATGAAACCCCATTTTCATATATTTCCCT
AACANTACCAAAAACCCCCCCAAAAAAAAAAAACTTTCGGCCAATTTCCC
CTATAAAAATAAAAGCGCAAAAAAAGCCAAAAAATTCCTATAACCCAATC
CC
NNNTTATTGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGATCTTGAATTTCATAATTGTGGTTC
TTCTTAGGAAATATTTCTATGAGGTTGATTTCTGGAGGGGATATAATGTC
TTGGCTTACTGTAGTGCTGTGCTTTTTAAATGTCTGGACATAGATATTGG
TTATCTACTTAAATATGAATTATTAGAACACCCAGCTGGAATACCAGGCA
GAAGTGGGAATATGGGTGCTGAAGTGGGCCGAGTCTGATCATACTTTCCA
CTCTTCTGGCTCCTCTCATATCCTTCTTGACCTCTCTATCTCCTCAGCTT
TGGGCTCCCATTTTCTCTCCATCTCTAAGCCCTCTACATACACACAAGCT
TAAACAAGCAGCAGGGACAGCAAAATCAAGACTAAAAATACCAAAACTTT
TTTTTTTTCCCCCCCCCAAAAANAAAACCCCCCCCACAAAAAAAAGGGGG
GGGGTTTNTGNNNTTCNTTTTGTGTTGGTCNNCTGCTGGGCCCTNGGCCT
GCCCTGGNGTGCTTTTGATCTCCCCNGTTCGCTTCCTTTTCCTTCTTTCN
TCTTCCCTTTGCCCCTGCGTCTTATTTGGCTTGNGATCTTGCGTCCCTTT
TGCTTTGCCTTGCTTGGACTCCGTTTGNCTTCGTCCCTCTGATTTCCTGT
GCTTTCTGCCCCTGTCTCTTTGACTCTTTATGTTTCCCTTTATCTCTTGC
CTTCAACACTCCCCCTTGTTTCTCTTCCTCCCCTCCTTTTTTTTCTTCCC
CTTTCTTCTACCCCTCCTCCCTCCTTTTCCCTTTTCCTATCTTTTACTCC
TTTTCCTTTTCTTTCCCTTCCTTTTTTCTCCTTCCTCCTTTCCCCCCCTT
CCCTCTTTTCTCCCCTTCTCTTTCCTCTTCTCTCTTTCCTCTTTCTCTCT
CTTTCTTCTTCTCTTCTTCTTTCTTTCCCTTACTACTCTCCTCTCCTCCT
CTCCCTTTTTCCTCTCTTCTCTTTCTCCTATTTTCTCCCTCCTCTTCCTC
CTCTCCTCCTCCTTTCTCCTTTCCTCTCTCCTCCTTTTCTCTCTCCTTTC
CTTTCTTTCCTCCTTTTTCTCTTCTCCCCCCTCCTCCCTTTCTCTTACTC
CTCCTTTCTTTCCCTTTCCCTCTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_g21.g1 MSMg01no193_g21.g1 CHROMAT_FILE:
MSMg01no193_g21.g1 PHD_FILE: MSMg01no193_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:51 2005
         (377 letters)



>mm_chr11_10649448_10650223
          Length = 776

 Score =  669 bits (346), Expect = 0.0
 Identities = 369/378 (97%), Gaps = 5/378 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgatcttgaatttcataattgtggttcttcttaggaaatatttctatgaggttgattt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 catg-tcttgaatttcataattgtggttcttcttaggaaatatttctatgaggttgattt 517

                                                                       
Query: 61  ctggaggggatataatgtcttggcttactgtagtgctgtgctttttaaatgtctggacat 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctggaggtgatataatgtcttggcttactgtagtgctgtgctttttaaatgtctggacat 457

                                                                       
Query: 121 agatattggttatctacttaaatatgaattattagaacacccagctggaataccaggcag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agatattggttatctatttaaatatgaattattagaacacccagctggaataccaggcag 397

                                                                       
Query: 181 aagtgggaatatgggtgctgaagtgggccgagtctgatcatactttccactcttctggct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagtgggaatattggtgctgaagtgggccgagtctgatcatactttccactcttctggct 337

                                                                       
Query: 241 cctctcatatccttcttgacctctctatctcctcagctttgggctcccattttctctcca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 336 cctctcatatccttcttgacctctctatctcctcagctttgggctcccattttctcccca 277

                                                                       
Query: 301 tctctaagccctctacatacacacaagctt--aaacaagcagcagggacagcaaaatcaa 358
           |||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||
Sbjct: 276 tctctaagccctctacatacacacaag--taaaaacaagcagcagggacagcaaaatcaa 219

                             
Query: 359 gactaaaaataccaaaac 376
           ||||||||||||||||||
Sbjct: 218 gactaaaaataccaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 776
Length adjustment: 9
Effective length of query: 368
Effective length of database: 767
Effective search space:   282256
Effective search space used:   282256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)