CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATGAACACTCCGAAATAGCAAGGCTTGTTAGTGGTGAGTGCTG
CAAGTTCTTCGTCTTAGGTCACTATTTACTTTTGTTAATGTCTACCTTAG
AGCAGCATCTGATTCCTAACATGCAGTCATGATATACCTTATGCAGTGGG
TATGACACCCAGAAAATATTTTGAAAATTGTCCACCGTCTTGTTTCATGA
TTCATTCCTCTTTATTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTNNNTGTNNNTNANNTTTTTTTTCTTTNTTTTCCTTGTTTGTTAT
TCTTTTTTATTTNTTTTTTCGCCCACTTCCTGCTGTTCTCCCTCGTGATT
ACTCTGGCTAGCCCCCCCACTTCCTTTAACTATCTGTCTTTGACACAGTG
CTAGACTTTCCTGTCCTTTCTTGTTCCGAAGCTGTAGTTACTTCTCTCAT
TTCTCTATGCTTTTCTTTCCTATACTTGATCCCATCCCCTCTTCTACTCC
TTTTGTTACCCCCTTCACTCTACTTCGCTCGGACCTTATTATTCTTCTGT
CCCCTATAACACCTATTTCTATCATTTTCTTTTCATCTCTTTGTACCCTT
TTCTTTACACTTTACCTCCCGTTCTCCATTCTTTACCCTATTTCATCTCC
TCGCCTCCTTCTTTACTTCTTCTTTTGCATTTATTTATTTTCTCTCCCCC
CTTCTTTTTGAATTTTCTAATCCTCTACGCTTTATACAAGCACACAC

CGATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCCTAATGGAGGTGAACT
ATAGAAGGTTTCAACAAATCAGGGCCAGGAAGAAAAGTGGGTGGGTTGGA
GAGCAGGGCAAGGGGACCCTTTAGGGGCTTTGGGGATAGCATTTGAAATG
TAAATGAAGAAAATATCTAATAAAAAATGAAAATGGCTAATTTATCTTAA
ATTTTCAGAAACTCATTACAATACATAGTAATCTTCTGGGTTAATATCAA
ATTATATTAAAGCATTCTTGGGTTCGTGGTCATCGCTTAGAACATCTTCT
GGAATGCCCAGTCACTACCTGGTCCTATTTCCCAGGTCATCAAAGATGAG
CCATGTTATTTTCTCCCCCCGCCCCTCCTGAGTTGGCATACTATTACACT
GGCAAAGGAGTAAATTACTGCAAATGTCATTGACCTGGAAGTAAGAGCCC
ATAGTTCTACTTTTGCCTTTGCCACCGGCCACCCAGGAGTTTGATTATCC
ATTTAAATTCTTAATGTTTCAATGTACTATTCCAAAGAACAAAAACAAAA
AACAAACAACAGAAAGAAAACTGTAGAAGATTAACCTTGCCAATGCAAAA
GACTTTTGGAGTCTCACTAAATACAGAAGTGTTTAGAAAGTTCAAAGCAT
TTTTTAAACGATTTTTTTCTAAAATCAATGCTTCCGGTTCTCTGNTAAAT
ACACCTTTACTTTTTATGATGACCACAGACCTTTCTTTTCTTTATG

Query= MSMg01no193_n14.b1 MSMg01no193_n14.b1 CHROMAT_FILE:
MSMg01no193_n14.b1 PHD_FILE: MSMg01no193_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:31 2005
         (264 letters)



>mm_chr11_28844894_28845557
          Length = 664

 Score =  484 bits (250), Expect = e-141
 Identities = 256/258 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctatgaacactccgaaatagcaaggcttgttagtggtgagtgctgcaagttct 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggaattcctatgaacactgtgaaatagcaaggcttgttagtggtgagtgctgcaagttct 365

                                                                       
Query: 64  tcgtcttaggtcactatttacttttgttaatgtctaccttagagcagcatctgattccta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcgtcttaggtcactatttacttttgttaatgtctaccttagagcagcatctgattccta 305

                                                                       
Query: 124 acatgcagtcatgatataccttatgcagtgggtatgacacccagaaaatattttgaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acatgcagtcatgatataccttatgcagtgggtatgacacccagaaaatattttgaaaat 245

                                                                       
Query: 184 tgtccaccgtcttgtttcatgattcattcctctttattaattgtgtgtgtgtgtgtgtgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgtccaccgtcttgtttcatgattcattcctctttattaattgtgtgtgtgtgtgtgtgt 185

                             
Query: 244 gtgtgtgtgtgtgtgtgt 261
           ||||||||||||||||||
Sbjct: 184 gtgtgtgtgtgtgtgtgt 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no193_n14.g1 MSMg01no193_n14.g1 CHROMAT_FILE:
MSMg01no193_n14.g1 PHD_FILE: MSMg01no193_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:31 2005
         (249 letters)



>mm_chr11_28710855_28711503
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagttggcatactattacactggcaaaggagtaaattactgcaaatgtcattgacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagttggcatactattacactggcaaaggagtaaattactgcaaatgtcattgacctg 260

                                                                       
Query: 61  gaagtaagagcccatagttctacttttgcctttgccaccggccacccaggagtttgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtaagagcccatagttctacttttgcctttgccaccggccacccaggagtttgatta 320

                                                                       
Query: 121 tccatttaaattcttaatgtttcaatgtactattccaaagaacaaaaacaaaaaacaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatttaaattcttaatgtttcaatgtactattccaaagaacaaaaacaaaaaacaaac 380

                                                                       
Query: 181 aacagaaagaaaactgtagaagattaaccttgccaatgcaaaagacttttggagtctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagaaagaaaactgtagaagattaaccttgccaatgcaaaagacttttggagtctcac 440

                    
Query: 241 taaatacag 249
           |||||||||
Sbjct: 441 taaatacag 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)