BAC Information

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BAC

Clone NameMSMg01-194B19
Chromosome11 (Build37)
Map Location 89,341,612 - 89,341,860
singlet/doubletsinglet
Overlap geneAnkfn1
Upstream geneMsi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194B19.T7 (MSMg01no194_b19.b1)MSMg01-194B19.TJ (MSMg01no194_b19.g1)
ACCAG383156AG383157
length840740
length of high quality
(start - end)
237 (70 - 306)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no194_b19.b1 PHD_FILE: MSMg01no194_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:54 2005CHROMAT_FILE: MSMg01no194_b19.g1 PHD_FILE: MSMg01no194_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATCCGCGGA
ATTCTGAGAGCTTAACAATAATCTTCCCAAGGAAGAGTACAGCAATTGGT
TTCTCAATACCAAATGGTCATGGTCAGCCCTGAAGATCTGTACATAGTAA
CAGAATGTACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACAAAACCCCCCACATACATATAATGTATTAATAATGT
ATTTATCTCACACATATATATGAATCTATACATATGTGATGNTTTGTATA
TTCTTGNACANNNNANTANCACCATTTGTAANTGTGNCCTTGTTGAAATA
AGTGTGACCTGGTTTGAAGTAATCGTGTCACTGGATGGNNNNNGCCTTAA
TACTCTCACCCCTAATTTCCCCCAAAACCNTCCTTCCCCTTAACACCCTT
TTGCATAAAAAGGNNAAAAACCTTATCCCCCCCGTNCCCTNNNNTCNNNC
CCTCACCTGCAACTAAAAAACAANNNNNNNNNNAAAACCCCAATTATAAA
TTTGTGTTAAAATAACAAAAAACAAAAAAGAAAGCCTTNGGGGNNNNNNN
NNNNNNNNCNNCNTCNCTCNCTCNTCNGCGCGAGGAGAAAAGAGAGACTT
NNNCAGCTCTTCTTCNCCNCNCNCTCTTTNTNTTCCTCCCTTTTTTTTCC
AACACCCCTTTCTTCACCCACCTTTCGAGAAAGGGACCTANNNNNNNNNN
TNNNNTNNTTNTNTTTCAGTATCAGCNNCTCNNCTCCCCCCCTTCTCTTT
CCNNNCTTCTTCATCTCTCTTCTAACATGCAACAAGAGGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCCCAAGAAGTTACTGGCTTGAAACC
AGAGTATTACGGCAAATGAGAGTAGGGAGGAAAATGTTGGTGATTCTCTA
ACTTAGGGGGTGTCCCCAAAATAAATATTTCACGGGTTAAGGTGTCTTAG
AGGATCTGTCTTCAAATCTTGACATAAGCACAAAACCCAGAAAGGGTTTG
ATTTTTCTAACAAAATAAATAAAATCAATGTGTCTGGTGAAAAAGCAGCC
TACAAACAGGGTATTTTGAACTTTTTGTTGTTTCTCCGATTGGTTTATGA
CAGAATTGTTTAAACTCGGTCCGNGCCCANACACCTGNTACTTGCCGAGA
GAAATGGCTTCGATGTTTTAGCCAGGTGGACTTTCAAACAGCTTATGGGG
CACAGCTGATGAGGAGAGTGAAGCTAGGTGAAATTAAGAGGTTTCATAAG
TCTCCCAGCTAGCCTTTTATGACTCTAAGTTCCGAGAAGCGGGGTGGTGA
CAATGTGCTACACGATTGCTTAGTGAGAAATGGCTTCAGGTCCTCTGTAC
TGAATAGAGCTGACCAATAGGAAATAAACCTTCCCAGTTTGCTTATGGAT
TCTTAAGCCCAGGTTTTGTTTTGGGGAGATAGTTCAACTCTCAAAGCACT
TGTTGCCCAATCTTCTGAGAGGATTGGTGTTTGTATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_b19.g1 MSMg01no194_b19.g1 CHROMAT_FILE:
MSMg01no194_b19.g1 PHD_FILE: MSMg01no194_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:54 2005
         (249 letters)



>mm_chr11_89341412_89342060
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccccaagaagttactggcttgaaaccagagtattacggcaaatgagagtagggaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcccccaagaagttactggcttgaaaccagagtattacggcaaatgagagtagggaggaa 390

                                                                       
Query: 61  aatgttggtgattctctaacttagggggtgtccccaaaataaatatttcacgggttaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatgttggtgattctctaacttagggggtgtccccaaaataaatatttcacgggttaagg 330

                                                                       
Query: 121 tgtcttagaggatctgtcttcaaatcttgacataagcacaaaacccagaaagggtttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtcttagaggatctgtcttcaaatcttgacataagcacaaaacccagaaagggtttgat 270

                                                                       
Query: 181 ttttctaacaaaataaataaaatcaatgtgtctggtgaaaaagcagcctacaaacagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttttctaacaaaataaataaaatcaatgtgtctggtgaaaaagcagcctacaaacagggt 210

                    
Query: 241 attttgaac 249
           |||||||||
Sbjct: 209 attttgaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)