BAC Information

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BAC

Clone NameMSMg01-194L01
Chromosome11 (Build37)
Map Location 45,940,601 - 45,940,886
singlet/doubletsinglet
Overlap geneAdam19
Upstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624
Downstream gene9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194L01.T7 (MSMg01no194_l01.b1)MSMg01-194L01.TJ (MSMg01no194_l01.g1)
ACCAG383515AG383516
length765727
length of high quality
(start - end)
427 (46 - 472)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no194_l01.b1 PHD_FILE: MSMg01no194_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:38 2005CHROMAT_FILE: MSMg01no194_l01.g1 PHD_FILE: MSMg01no194_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTAGCGGGTTCTTCAATCCCAGAGAACATCTATTTTCTTATCAACAAA
GATGGCTCTGCCAGAGCCTGACAAATACAGAGGAGGATGCTCACAGACAA
CCATTGGATGGAGCGTGGGGACTCCTGATGGAGGAGTTGGAGAAGGGACT
GAAGGAGCTGAGGGGGTTTGCAGCCCCACGGGGCAGGGGGGGGGCAGCAA
CAGTGTCAACAGACCAGACACCCTGGAGCTCCCAGGGACTGGACCACCAA
CCAAAGAGTACACATGGAGGGACCCATGGCTCTGGCCACATATGTGGCAA
AGGATGGTCTTGTTGGACATCAGTGGGAGCAGTGGCCCTTGAACCTGAGG
GGGTTCGATGCTCCAGTGTAGGGGAATCCCAGGGTGGGAAGGCAGGAGTG
GGTAGGTAGGTGGGTGTGGGGGNNNNTNCCTTCCCNNTTCTCTCCCCCTC
CCTCTCCCCTCTCTCTTCTCTTTTTTTTCCCTCCTTCTCTTTGTTTTTCT
CCCTTTTCTTTCTTTTCTTCTCCCCTCTCTCTTTCTTTTTTCGCTTCTTC
CCCGCCCCCCCCTCCTATACTCCCTCTACCTAACTTTCTATCCACCTACT
CTCTTTTTTTTCTCCCCTCGCCTCCTCCCCTCTTTCTTTCCCTTCCACCT
CTCCTCTTACCCTTCCTTCTTTTTTTCCATCCCCCCATCCCTTTTCTTCC
CCTTCCCCTCTCTCN
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTTGGTGTACTGATGAATGTC
CTGGTGAGGCAGAGGGCGTGTGTACGGTTTTCATCCAAGTGAACTAAGCC
TCTTGAGTGGCAGGCAGGACAGCAAGCTGTCGGTGTGCTTCAGCTCCGCT
AACGCCTCCTTCTTCTCTGTCAGGCACCCTTTCCCCAAAGTGTTCAGTTG
GTGTAACAGGAAGGAGCTGGACAGGTATCTGCAGACAGGAGGAGGGATGT
GTCTCTCCAACATGCCGGACACTAGGACGCTGTATGGAGGCCGGAGGTGT
GGCAACGGGTACTTTTTTTACGCCCACCCCCGCGACTGTGGAGAAGAGGA
GGTAAGTGTCAGGACCTTACTAGAGAGAGGAACAAATCTGTATTGTCTTC
AGAGCTTAAGGACATTTGAAAGCACAATGTGACAGATAAGTTCCTATCAA
AAGGACAATGCGGTCGATAACTTCCTATGGAAAGGACAAAGGGACAGATT
TTTCCCAGTTGCCAGCACTTCTTACACATGACTACCGAAGGCCCTCTGTG
TGTCAGAGGCAGACAGTGAGTCTGCCAGGTGGACCGTTTCGATGGCCTCT
GCAGCTGTGGTCAGGACAGTCCTATCCAGGATCAGGGTGGAGCTCCTTTG
AGCAGCTGCTCTAGCCACAGACCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_l01.g1 MSMg01no194_l01.g1 CHROMAT_FILE:
MSMg01no194_l01.g1 PHD_FILE: MSMg01no194_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:38 2005
         (287 letters)



>mm_chr11_45940401_45941087
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagttggtgtactgatgaatgtcctggtgaggcagagggcgtgtgtacggttttcatcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 taagttggtgtactgatgaatgtcctggtgaggcagagggcgtgtgtagggttttcatcc 260

                                                                       
Query: 61  aagtgaactaagcctcttgagtggcaggcaggacagcaagctgtcggtgtgcttcagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgaactaagcctcttgagtggcaggcaggacagcaagctgtcggtgtgcttcagctc 320

                                                                       
Query: 121 cgctaacgcctccttcttctctgtcaggcaccctttccccaaagtgttcagttggtgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctaacgcctccttcttctctgtcaggcaccctttccccaaagtgttcagttggtgtaa 380

                                                                       
Query: 181 caggaaggagctggacaggtatctgcagacaggaggagggatgtgtctctccaacatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaaggagctggacaggtatctgcagacaggaggagggatgtgtctctccaacatgcc 440

                                                         
Query: 241 ggacactaggacgctgtatggaggccggaggtgtggcaacgggtac 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacactaggacgctgtatggaggccggaggtgtggcaacgggtac 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)